View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_36 (Length: 213)
Name: NF4033_low_36
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 13273026 - 13273156
Alignment:
| Q |
56 |
gagggcattaatactcaccaaattttttatatttgacaggacaacgagattttgatttttggatgtatgaccaatgaacaagtcatatatataatgtatt |
155 |
Q |
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| T |
13273026 |
gagggcattaatactcaccaaa--------atttgacaggaccacgagattttgatttttggatgtatgacctatgaaaaagttttatagataatgtatt |
13273117 |
T |
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| Q |
156 |
tcgtatagggcattaatacttactaaccaatattttgat |
194 |
Q |
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| T |
13273118 |
tcgtagagagcattaatacttactcaccaatattttgat |
13273156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 13273138 - 13273265
Alignment:
| Q |
67 |
tactcaccaaattttttatatttgacaggacaacgagattttgatttttggatgtatgaccaatgaacaagtcatatatataatgtatttcgtatagggc |
166 |
Q |
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| T |
13273138 |
tactcaccaatattttgatattttacgggatcacaaaattttgatttttggatgtatgacctatgaacaagttatatagataatgtatttcgtagagggc |
13273237 |
T |
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| Q |
167 |
attaatacttactaaccaatattttgat |
194 |
Q |
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| T |
13273238 |
attaatacttactcaccaatattttgat |
13273265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 13273247 - 13273375
Alignment:
| Q |
67 |
tactcaccaaattttttatatttgacaggacaacgagattttgatttt-tggatgtatgaccaatgaacaagtcatatatataatgtatttcgtataggg |
165 |
Q |
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| T |
13273247 |
tactcaccaatattttgatattttacgggaccgcaagattttgattttttggatgtatgacctatgaacaagttatatatataatgtattttgtagaggg |
13273346 |
T |
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| Q |
166 |
cattaatacttactaaccaatattttgat |
194 |
Q |
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| T |
13273347 |
catcaatacttactaaccaatattttgat |
13273375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 13273465 - 13273559
Alignment:
| Q |
66 |
atactcaccaaattttttatatttgacaggacaacgagattttgatttttggatgtatgaccaatgaacaagtcatatatataatgtatttcgta |
160 |
Q |
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| T |
13273465 |
atactcaccaatattttgatattttacgggaccacaagattttaatttttggatgtatgacctatgaacaagttatatagataatgtatttcgta |
13273559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 13273404 - 13273484
Alignment:
| Q |
114 |
ttggatgtatgaccaatgaacaagtcatatatataatgtatttcgtatagggcattaatacttactaaccaatattttgat |
194 |
Q |
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| T |
13273404 |
ttggatgtatgacctatgtacaagttatatagacaatgtatttaatagagggcattaatacatactcaccaatattttgat |
13273484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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