View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_4 (Length: 577)
Name: NF4033_low_4
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 279 - 544
Target Start/End: Complemental strand, 25881310 - 25881045
Alignment:
| Q |
279 |
ttgaatatgaggatgaggattgagaaagtgaagtaggtttgtatttatttatgaagagaaatatcaatactatagggaagatgagattttaatttggtgg |
378 |
Q |
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| T |
25881310 |
ttgaatatgaggatgaggattgagaaagtgaagtaggtttgtatttatttatgaagagaaatatcaatactatggggaagatgagattttaatttggtgg |
25881211 |
T |
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| Q |
379 |
ggtccatttggcgccaaaaagatgattgattttgttaatgaaaagagtggagtgaaagagaagtaacatgatattgtaataatgtctgtatttggataca |
478 |
Q |
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| T |
25881210 |
ggtccatttggcgccaaaaagatgattgattttgttaatgaaaagagtggagtgaaagagaagtaacatgatattgtaataatgtctgtatttggataca |
25881111 |
T |
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| Q |
479 |
atacaacatgaaattggatcaatggatttggaaattatgttgagtttctaatgttgaaatgattgt |
544 |
Q |
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| T |
25881110 |
atacaacatgaaattggatcaatggatttggaaattatgttgagtttctaatgttgaaatgattgt |
25881045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 25881555 - 25881459
Alignment:
| Q |
19 |
gacagggtgtaaggtcgttttcgttccagtcggagaatgtagttgcggtgtcgccgccgtcgacggcggatttgagtgtcagaagagcgaggccgtc |
115 |
Q |
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| T |
25881555 |
gacagggtgtaaggtcgttttcgttccagtcggagaatgtagttgcggtgtcaccgccgtcgacggcggatttgagtgttagaagagcgaggccgtc |
25881459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 25881399 - 25881313
Alignment:
| Q |
175 |
taatttgcatttagaatttgaagtacgacgccgttttgggtt----------gagttaagtacggtacggtgagttcagttgagttc |
251 |
Q |
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| T |
25881399 |
taatttgcatttagaatttgaagtacgacgccgttttgggttgtgttggttagagttaagtacggtacggtgagttcagttgagttc |
25881313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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