View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4033_low_5 (Length: 528)
Name: NF4033_low_5
Description: NF4033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4033_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 158 - 455
Target Start/End: Original strand, 15076234 - 15076533
Alignment:
| Q |
158 |
cttgcaagttttcttcctgaatattgtggtcagttaccttgatttgatgaaaaatcttagtcaaatgttgtgttgagctacattgtgatccttaatatta |
257 |
Q |
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| T |
15076234 |
cttgcaagttttcttcctgaatattgtggtcagttaccttgatttgatgaaaaatcttagtcaaat-ttgtgttgagctacattgtgatccttaatatta |
15076332 |
T |
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| Q |
258 |
tgaaaaatcgcacttaaatattttgtatgnnnnnnnctttgg-ttatga-tatctttaacatctcattattcttcatatctctttcaattacattaccaa |
355 |
Q |
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| T |
15076333 |
tgaaaaatcgcacttaaatattttgtatgtttttttctttggattatgattatctttaacatctcattattcttcatatctctttcaattacattaccaa |
15076432 |
T |
|
| Q |
356 |
tatatcatatgtatatatcatatcactttctttaattttttatttctcaagtgtaaaatgagtggttgggtgtccatgaattatcatcttt-tttgtatt |
454 |
Q |
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| T |
15076433 |
tatatcatatgtatatatcacatcactctctttaattttttatgcctcaagtgtaaaatgagtgattgggtgtccatgaattatcatctttctttgtatt |
15076532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 15070938 - 15071016
Alignment:
| Q |
7 |
gaagcataggtgttatgcatgcatggacaaattaagctagaatctctcaacttaatatgtgtcttgtcattttgtaacc |
85 |
Q |
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| T |
15070938 |
gaagcataggtgttatgcatgcatggacaaattaagctagaatctctcaacttaatatgtgtcttgtcattttgtaacc |
15071016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 15064408 - 15064508
Alignment:
| Q |
158 |
cttgcaagttttcttcctgaatattgtggtcagttaccttgatttgatgaaaaatcttagtcaaatgttgtgttgagctacattgtgatccttaatatta |
257 |
Q |
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| T |
15064408 |
cttgctagttttactcatgaatattctgttcagttaccttgatttgataaaatatcttggtcaaatgttgtgttcaccaacattgtgatccttgatatta |
15064507 |
T |
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| Q |
258 |
t |
258 |
Q |
| |
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| T |
15064508 |
t |
15064508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 15064216 - 15064266
Alignment:
| Q |
7 |
gaagcataggtgttatgcatgcatggacaaattaagctagaatctctcaac |
57 |
Q |
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| T |
15064216 |
gaagcataggtgtaatgcatgcatggacaaattaagctagaatctctcaac |
15064266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 439
Target Start/End: Original strand, 15071352 - 15071424
Alignment:
| Q |
368 |
atatatcatatcactttctttaatt-ttttatttctcaagtgtaaaatgagtggttgggtgtccatgaattat |
439 |
Q |
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| T |
15071352 |
atatatcatataactctctttgattcttttatctctcaagtgtaaaatgagtgtttgggtgtctttgaattat |
15071424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 30854278 - 30854165
Alignment:
| Q |
158 |
cttgcaagttttcttcctgaatattgtggtcagttaccttgatttgatgaaaaa--tcttagtcaaatgttgtgttgagctacattgtgatccttaatat |
255 |
Q |
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||||||||||||| |||| |||||| || ||| ||||||||||||||| ||||| ||| |||||||||||| ||| |||||||||||||||||| |||| |
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| T |
30854278 |
cttgcaagttttcctccttaatattttgttcaattaccttgatttgataaaaaaaatctcagtcaaatgttgagttcagctacattgtgatccttcatat |
30854179 |
T |
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| Q |
256 |
tatgaaaaatcgca |
269 |
Q |
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||| |||||||||| |
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| T |
30854178 |
tataaaaaatcgca |
30854165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 30878664 - 30878618
Alignment:
| Q |
7 |
gaagcataggtgttatgcatgcatggacaaattaagctagaatctct |
53 |
Q |
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| T |
30878664 |
gaagcataggtgtcatgcatgcatggacaaattaagctagaatctct |
30878618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 30854465 - 30854421
Alignment:
| Q |
7 |
gaagcataggtgttatgcatgcatggacaaattaagctagaatct |
51 |
Q |
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| T |
30854465 |
gaagcataggtgtcatgcatgcatggacaaattaagctggaatct |
30854421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 507
Target Start/End: Complemental strand, 30854063 - 30853924
Alignment:
| Q |
367 |
tatatatcatatcactttctttaattttttatttctcaagtgtaaaatgagtggttgggtgtccatgaattatcatcttttttg-tatttactgccagag |
465 |
Q |
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| T |
30854063 |
tatatatcatatcaatctttttatttctttatctctcaagtgtagagtgagt-gtttgatgtccatgaattatcatcttccttgttctttactacaagag |
30853965 |
T |
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| Q |
466 |
aaagtg-ttctaggaaggtccacctaattgctctaatatataa |
507 |
Q |
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| T |
30853964 |
aaagcgtttcaagga--gtccacctaattgttctaatctataa |
30853924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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