View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4034_high_4 (Length: 356)
Name: NF4034_high_4
Description: NF4034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4034_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 27113028 - 27112688
Alignment:
| Q |
1 |
ttattttgaaatcatcacatgctctctcgataataaccatatgtatttcattnnnnnnngatggaattgcaatgacctacccgagannnnnnnaaatgac |
100 |
Q |
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| T |
27113028 |
ttattttgaaatcatcacatgctctctcgataataaccatatgcatttcattaaaaaaagggggaattgcaatgacctacccgagatttatttaaatgac |
27112929 |
T |
|
| Q |
101 |
aaacacactcctcttgttttcgcattgaagtcattcacttccattatcatgccctaagtgctatatatcctccacctcccttctttctttgcgtgcataa |
200 |
Q |
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| T |
27112928 |
aaacacactcctcttgttttcgcattgaagtcattcacttccattatcatgccctaagtgctatatatcctccacctcccttcttcctttgcgtgcataa |
27112829 |
T |
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| Q |
201 |
g-aaaacaaaagttattgacacattttgaagtgaaagtatnnnnnnncaattaaatttactgttttgaactgcgattaatagaggatgatgttaatacaa |
299 |
Q |
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| T |
27112828 |
gaaaaaaaaaagttattgacacattttgaagtgaaagtaaaaaaaaacaattaaatttactgttttgaactgcgattaatagaggatcttgttaatacaa |
27112729 |
T |
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| Q |
300 |
gtgattcccatccttcaccgttatagcaagtcatattgaca |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27112728 |
tcgattcccatccttcaccgttatagcaagtcatattgaca |
27112688 |
T |
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