View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4034_high_7 (Length: 245)
Name: NF4034_high_7
Description: NF4034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4034_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27113185 - 27113428
Alignment:
| Q |
1 |
aagtacatatcaagccacatttattttatcctctagaaagaagnnnnnnnn----gccaaatttatttgttcccattcttgaagttcagccattgggact |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27113185 |
aagtacatatcaagccacatttattttatcctctagaaagaagaagaaaaaaaaagccacatttatttgttcccattcttgaagttcagccattgggact |
27113284 |
T |
|
| Q |
97 |
aaagagagaatgcatttgaaaagaaaaggtaaacttgtaaatgagataagaggaggtttcaatgtcaatgaatcgtctcaaacgcctgcaggaaaaccac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27113285 |
aaagagagaatgcatttgaaaagaaaaggtaaacttgtaaatgagataagaggaggtttcaatgtcaatgaatcgtctcaaacgcctgcaggaaaaccac |
27113384 |
T |
|
| Q |
197 |
cctttctcggatcgctgattgccacaatctttccaatacctttg |
240 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27113385 |
cctttctcggatcactgattgccacaatctttccaatacctttg |
27113428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 39861754 - 39861837
Alignment:
| Q |
156 |
caatgtcaatgaatcgtctcaaacgcctgcaggaaaaccaccctttctcggatcgctgattgccacaatctttccaataccttt |
239 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||||||||||||| ||||| || | ||||||| |||||| | |||||| |
|
|
| T |
39861754 |
caatgtcgatgaattttctcaaatgcctgcaggaaaaccaccctttcttggatcacttacggccacaagctttccgacaccttt |
39861837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University