View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4034_low_1 (Length: 668)
Name: NF4034_low_1
Description: NF4034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4034_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 19 - 653
Target Start/End: Complemental strand, 21122691 - 21122057
Alignment:
| Q |
19 |
cttcccccaatttaaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttcttgtcacggtgattgatataaccttatcaaacat |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21122691 |
cttcccccaatttcaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttcttgtcacggtgattgatataaccttatcaaacat |
21122592 |
T |
|
| Q |
119 |
atccaattcctcagccttcttgccaacttccgttacaagggttgtttttccacatccacccattccgtgcattccaattatagagatgcgatcatcctca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
21122591 |
atccaattcctcagccttcttgccaacttccgttacaagggttgtttttccacatccacccattccgtacagtccaattatagagatgcgatcatcctca |
21122492 |
T |
|
| Q |
219 |
agtgccttcaagagttgatcataagccacttttgttgattcaaaatagatgaagtcttcggatgactgatactgaatacctggtagtggagcaagatgag |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21122491 |
agtgccttcaagagtttatcataagccacttttgttgattcaaaatagatgaagtcttcggatgactgatacagaatacctggtagtggagcaagatgag |
21122392 |
T |
|
| Q |
319 |
aaaatggttcaatatctttgcttttgcctttgaacctccccattgcgtctatcttctgcaccatttgtttgcacaaaagatatcgtccacacgttggaaa |
418 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21122391 |
aaaatggttcgatatctttgcttttgcctttgaacctccccattgcgtctatcttctgcaccatttgtttgcacaaaagatatcgtccacacgttggaaa |
21122292 |
T |
|
| Q |
419 |
ccatccttggaagcaattgttgtctgtctccgtcctctccacaagaacctccacctctctcaggagattttccacatcaatcaaccacttctccactggt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||| |
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|
| T |
21122291 |
ccatccttggaagcaattgttgtctgtctccgtcctttgtacaagaacctccacctctctaaggagtttttccacatcattcagccacttctccactggt |
21122192 |
T |
|
| Q |
519 |
ttttcaattacttcagttctctctttggcttgttcaacacgagttagcaagttatctctttcagatgtcagtgcctccttttctttctcaagatcattga |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
21122191 |
ttttcaattacttcagttctctctttggctcgttcaacacgaattagcaagttatctctttcagatgtcagtgcttccttttctttctcaagatcattga |
21122092 |
T |
|
| Q |
619 |
ttgtgttattaacacaaagaaggtattgaacttcg |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
21122091 |
ttgtgttattaacacaaagaaggtattgaacttcg |
21122057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 653
Target Start/End: Complemental strand, 21115264 - 21114630
Alignment:
| Q |
19 |
cttcccccaatttaaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttcttgtcacggtgattgatataaccttatcaaacat |
118 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| || ||| ||||||| ||||| ||||||||| | || |||||||||||||||||||||||||| |
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|
| T |
21115264 |
cttcctccaatttcaagtttaacatatctgcaagttttccctgaatgcctctaatatttggagtttgagcgacagtgattgatataaccttatcaaacat |
21115165 |
T |
|
| Q |
119 |
atccaattcctcagccttcttgccaacttccgttacaagggttgtttttccacatccacccattccgtgcattccaattatagagatgcgatcatcctca |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||||| | |||||| ||||||||||||| |||||||| | |
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|
| T |
21115164 |
atctaattcctcagccttcttgccaacttctgctgcaagggttgtttttccgcatccacccattccatacattcctattatagagatgcaatcatcctta |
21115065 |
T |
|
| Q |
219 |
agtgccttcaagagttgatcataagccacttttgttgattcaaaatagatgaagtcttcggatgactgatactgaatacctggtagtggagcaagatgag |
318 |
Q |
| |
|
||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||||||| |||||| |
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|
| T |
21115064 |
agtgcctccaatagttgattgtaagccacctttgttgattcaaaataaatgaattcttcaaatgaccgatacctgctacctggtagtggagcacgatgag |
21114965 |
T |
|
| Q |
319 |
aaaatggttcaatatctttgcttttgcctttgaacctccccattgcgtctatcttctgcaccatttgtttgcacaaaagatatcgtccacacgttggaaa |
418 |
Q |
| |
|
||||||||| |||||| ||||||| |||||| | ||||||| || |||||||| || |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
21114964 |
aaaatggttgaatatcaatgcttttacctttgtatttccccatcgcatctatcttttgtaccatttgcttgcacaaaagataccgtccacacgttggaaa |
21114865 |
T |
|
| Q |
419 |
ccatccttggaagcaattgttgtctgtctccgtcctctccacaagaacctccacctctctcaggagattttccacatcaatcaaccacttctccactggt |
518 |
Q |
| |
|
||||||||| ||||||||| |||||| || ||||| | ||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
21114864 |
ccatccttgaaagcaattggcgtctgtttctgtcctttgcacaagaacatccacctctctcaagagattttctacaacaatcaaccacttctccactggt |
21114765 |
T |
|
| Q |
519 |
ttttcaattacttcagttctctctttggcttgttcaacacgagttagcaagttatctctttcagatgtcagtgcctccttttctttctcaagatcattga |
618 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||| |||| ||| | | ||| || ||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
21114764 |
ttttcaattatttcagttttctccaaggcttgtgcaacgcgaatcaacaaattgtctctttcagatgtcagcgcctccttttcagtctcaagatcattga |
21114665 |
T |
|
| Q |
619 |
ttgtgttattaacacaaagaaggtattgaacttcg |
653 |
Q |
| |
|
|| |||||||||||||||| |||||| |||||| |
|
|
| T |
21114664 |
ttacattattaacacaaagaaagtattgtacttcg |
21114630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 33 - 334
Target Start/End: Original strand, 21715713 - 21716014
Alignment:
| Q |
33 |
aagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttcttgtcacggtgattgatataaccttatcaaacatatccaattcctcag |
132 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||| ||||| ||| ||||| | ||| ||||| ||||| |||||||| ||||||| |||||| || |
|
|
| T |
21715713 |
aagtttaacatgtctgccatttttccttgaatgtctctaatattttgagtttgagacactgtgatagatattaccttatcgaacatatttgattcctgag |
21715812 |
T |
|
| Q |
133 |
ccttcttgccaacttccgttacaagggttgtttttccacatccacccattccgtgcattccaattatagagatgcgatcatcctcaagtgccttcaagag |
232 |
Q |
| |
|
||||||| || ||||| |||||||| |||||||| ||||||||||||||||| | || || || ||| |||||| |||||| | ||| || |||||| |
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|
| T |
21715813 |
ccttcttaccgacttcggttacaagtgttgttttcccacatccacccattccatacacacctatcatatagatgcaatcatcatttagtaactccaagag |
21715912 |
T |
|
| Q |
233 |
ttgatcataagccacttttgttgattcaaaatagatgaagtcttcggatgactgatactgaatacctggtagtggagcaagatgagaaaatggttcaata |
332 |
Q |
| |
|
|||| |||||| |||||||||||| || || | || | ||||| ||||| || ||||| ||||| || |||||| |||||||||||||| |||| |
|
|
| T |
21715913 |
ctgattgtaagccgcttttgttgattggaagtaagtaaaattctcggacgactggtattgaatgcctggaagaggagcataatgagaaaatggttgaata |
21716012 |
T |
|
| Q |
333 |
tc |
334 |
Q |
| |
|
|| |
|
|
| T |
21716013 |
tc |
21716014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 21703802 - 21703651
Alignment:
| Q |
33 |
aagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttcttgtcacggtgattgatataaccttatcaaacatatccaattcctcag |
132 |
Q |
| |
|
|||||||||| | |||| |||| ||||||||| | |||| |||||||||| | ||| |||||| | ||||||||||| ||||||| ||||||||| |
|
|
| T |
21703802 |
aagtttaacaaagctgccatttttccttgaatttttctaacgtttggagtttgagacactgtgattaagataaccttatcgaacatatttgattcctcag |
21703703 |
T |
|
| Q |
133 |
ccttcttgccaacttccgttacaagggttgtttttccacatccacccattcc |
184 |
Q |
| |
|
||||||| |||||||| ||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
21703702 |
ccttcttaccaacttcagttgcaagagttgttttcccacatccacccattcc |
21703651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 613
Target Start/End: Original strand, 23011090 - 23011192
Alignment:
| Q |
511 |
ccactggtttttcaattacttcagttctctctttggcttgttcaacacgagttagcaagttatctctttcagatgtcagtgcctccttttctttctcaag |
610 |
Q |
| |
|
|||||||| | |||||| |||| ||||| | ||||||||||||||||||| | ||||||||||||||| || ||| ||| |||||| |||||||| |
|
|
| T |
23011090 |
ccactggtatctcaatttcttcggttctatgtttggcttgttcaacacgaaccaacaagttatctctttcgaataccagctccttcttttcattctcaag |
23011189 |
T |
|
| Q |
611 |
atc |
613 |
Q |
| |
|
||| |
|
|
| T |
23011190 |
atc |
23011192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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