View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4034_low_2 (Length: 455)
Name: NF4034_low_2
Description: NF4034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4034_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 209 - 438
Target Start/End: Complemental strand, 54456645 - 54456416
Alignment:
| Q |
209 |
ggattttcagattgaattacttggaagagatcgatcagggatatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
308 |
Q |
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| T |
54456645 |
ggattttcagattgaattacttggaagagatcggtcagggagatatgtgacggtgggatgagaaggctgcatggttgatggattgatgttatcgatagca |
54456546 |
T |
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| Q |
309 |
cgaaatttgaactccattgaacaaacacttgaaactataaataaatattcagagaaacaaaactggtattaattaatgagtgctaataacgttgttgaat |
408 |
Q |
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| T |
54456545 |
cggaatttgaactccattgaacaaaaacttgaaactataaataaatattcagagaaacaaaactggtattaattaatgagtgctaataacgttgttgaat |
54456446 |
T |
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| Q |
409 |
tgaaaaaagctaaaaacataacatagagaa |
438 |
Q |
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| T |
54456445 |
tgaaaaaagctaaaaacataacatagagaa |
54456416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 209 - 351
Target Start/End: Complemental strand, 54056330 - 54056188
Alignment:
| Q |
209 |
ggattttcagattgaattacttggaagagatcgatcagggatatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
308 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54056330 |
ggattttcctattgaattacttggaagagatcgatcagggagatatgtgacggtgggaagagaaggctgcatggttgatggattgatgttgtcgatagca |
54056231 |
T |
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| Q |
309 |
cgaaatttgaactccattgaacaaacacttgaaactataaata |
351 |
Q |
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| T |
54056230 |
cgaaatttgaactccattgaacaaacacttgaaactgtaaata |
54056188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 54456843 - 54456716
Alignment:
| Q |
1 |
cacttcatcctccacctctatccgccgcaacatatcccgcctgatttgttccttctccatctctcgtcgtaatgccgcctcgttggtggccaatggtgct |
100 |
Q |
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| T |
54456843 |
cacttcatcctccaactctatccgccgcaacatatcccgccggatttgttccttctccatctctcgtcgtaatgccgcctcgttggtggccaatggtgct |
54456744 |
T |
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| Q |
101 |
cggaagccagcaaaaccaccgtccactg |
128 |
Q |
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| T |
54456743 |
cggaagccagcaaaaccaccgtccactg |
54456716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 54056522 - 54056396
Alignment:
| Q |
1 |
cacttcatcctccacctctatccgccgcaacatatcccgcctgatttgttccttctccatctctcgtcgtaatgccgcctcgttggtggccaatggtgct |
100 |
Q |
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| T |
54056522 |
cacttcctcctccaactccatccgcctcaacatatcccgccggatttgttccttctcgatctctcgtcgtaatgccgcctcattggtggccaacggtacc |
54056423 |
T |
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| Q |
101 |
cggaagccagcaaaaccaccgtccact |
127 |
Q |
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||| |||||| |||||||||||||||| |
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| T |
54056422 |
cgggagccagaaaaaccaccgtccact |
54056396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 52322202 - 52322251
Alignment:
| Q |
280 |
tggttgatggattgatgttgtcgatagcacgaaatttgaactccattgaa |
329 |
Q |
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| T |
52322202 |
tggttgatggattgatgttgtcgatagcacgatatttgaactccattgaa |
52322251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 15043438 - 15043479
Alignment:
| Q |
306 |
gcacgaaatttgaactccattgaacaaacacttgaaactata |
347 |
Q |
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| T |
15043438 |
gcacgaaatttgaactccattgaagaaatacttgaaactata |
15043479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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