View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4034_low_5 (Length: 323)

Name: NF4034_low_5
Description: NF4034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4034_low_5
NF4034_low_5
[»] chr2 (6 HSPs)
chr2 (139-237)||(40077137-40077235)
chr2 (139-237)||(40059109-40059207)
chr2 (139-237)||(40085047-40085145)
chr2 (19-48)||(40059007-40059036)
chr2 (19-48)||(40077021-40077050)
chr2 (19-48)||(40084945-40084974)
[»] chr4 (1 HSPs)
chr4 (139-212)||(22016224-22016297)
[»] chr3 (2 HSPs)
chr3 (139-211)||(44352747-44352819)
chr3 (139-232)||(53322448-53322539)
[»] chr8 (1 HSPs)
chr8 (139-224)||(5450729-5450814)
[»] chr7 (1 HSPs)
chr7 (139-195)||(35052914-35052970)
[»] chr5 (1 HSPs)
chr5 (139-196)||(9642493-9642550)


Alignment Details
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 40077137 - 40077235
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 237  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077137 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40077235  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 40059109 - 40059207
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 237  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059109 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40059207  T

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Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 40085047 - 40085145
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 237  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085047 agatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40085145  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 40059007 - 40059036
Alignment:
Q  19 ctattcactaccctcgtagtactccacagg 48  Q
    ||||||||||||||||||||||||||||||    
T  40059007 ctattcactaccctcgtagtactccacagg 40059036  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 40077021 - 40077050
Alignment:
Q  19 ctattcactaccctcgtagtactccacagg 48  Q
    ||||||||||||||||||||||||||||||    
T  40077021 ctattcactaccctcgtagtactccacagg 40077050  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 40084945 - 40084974
Alignment:
Q  19 ctattcactaccctcgtagtactccacagg 48  Q
    ||||||||||||||||||||||||||||||    
T  40084945 ctattcactaccctcgtagtactccacagg 40084974  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 22016297 - 22016224
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaac 212  Q
    |||||||||| ||||||||||| ||||| |||||||| ||| | ||||| ||||| || |||||||||||||||    
T  22016297 agatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaac 22016224  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 44352819 - 44352747
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaa 211  Q
    |||||||||| |  |||||||||| | | ||||| || ||| |||||||||||||||||||||||||||||||    
T  44352819 agatgtggcctgctcttattcaaacagcaaaagaaggtggaatagatgtcattgaaacctatgttttctggaa 44352747  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 53322448 - 53322539
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacctgttaaagg 232  Q
    ||||||||||| |||| |||||||||| || |||||||||| |  |||||||  ||| ||||| |||||||||||||||| |||| ||||||||    
T  53322448 agatgtggccaaacctcattcaaaaatatatagatggaggattttatgtcatccaaa-ctatg-tttctggaacttacataaaccagttaaagg 53322539  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 5450729 - 5450814
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaacctatgttttctggaacttacatgaacct 224  Q
    ||||||||||||| ||||| || ||  ||||||| |||||| | ||||| ||| |||||||||||||||||||   ||||||||||    
T  5450729 agatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaacct 5450814  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 35052970 - 35052914
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaa 195  Q
    ||||||||||| ||||||||||||||| || ||||||||||||  ||||||| ||||    
T  35052970 agatgtggccaaaccttattcaaaaatttatagatggaggactttatgtcatcgaaa 35052914  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 9642493 - 9642550
Alignment:
Q  139 agatgtggccagaccttattcaaaaatctaaagatggaggactagatgtcattgaaac 196  Q
    |||||||||| ||||||||||||||  | |||||||| || ||||||| |||||||||    
T  9642493 agatgtggcctgaccttattcaaaaggccaaagatggtggcctagatgccattgaaac 9642550  T

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