View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4034_low_8 (Length: 235)
Name: NF4034_low_8
Description: NF4034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4034_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 10990828 - 10990925
Alignment:
| Q |
15 |
aattctgctattattctttgctcattcttggtgacttgaggattttcttatcttgatagtagcagtattcattccaacattcttggtttagaatcacc |
112 |
Q |
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| T |
10990828 |
aattttgctattattctttgctcattcttggtgacttgaggattttcttatcttgatagtagcagtattcattccagcattcttggtttagaatcacc |
10990925 |
T |
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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 10991113 - 10991196
Alignment:
| Q |
152 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacagatctctttcaatacatcatatacgtctttgaggc |
235 |
Q |
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| T |
10991113 |
taccatgaaatgacattttttcggattcaacatcaaatttgtttttacacatctctttcaatacatcatatacgtctttgaggc |
10991196 |
T |
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