View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_11 (Length: 429)
Name: NF4035_high_11
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 42520302 - 42520701
Alignment:
| Q |
20 |
gacattacatacttgacaactaagcaatgcactgaaaaccacaaatttgtgtatgccttgttgttttggattttgcaggcataaatgtcctttgtggagt |
119 |
Q |
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| T |
42520302 |
gacattacatacttgacaactaagcaatgcactgaaaaccacaaatttgtgtatgccttgttgttttggattttgcaggcataaatgtcctttgtggagt |
42520401 |
T |
|
| Q |
120 |
aggaatcctttcaaccccttatgctgctaaagaaggtggatgggtaggactttccatcttgttcatttttggaattctttctttttatactggattgctc |
219 |
Q |
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| T |
42520402 |
aggaatcctttcaaccccttatgctgctaaagaaggtggatggctaggactttccatcttgttcatttttggaattctttctttttatactggattgctc |
42520501 |
T |
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| Q |
220 |
ttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctgcttttggtactgccggacgaattgctatttcagtaagtc |
319 |
Q |
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| T |
42520502 |
ttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctgcttttggtactgccggacgaattgctatttcagtaagtc |
42520601 |
T |
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| Q |
320 |
gatcttcatgctcatctaaatactcttacttgcgatcttttccnnnnnnnattgcttgtgtttggtggtttgtgttggtatctaatctcaatttcctatg |
419 |
Q |
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| T |
42520602 |
gatcttcatgctcatctaaatactcttacttgtgatcttttcctttttttattgcttgtgtttggtggtttgtgttggtatctaatctcaatttcctatg |
42520701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 291
Target Start/End: Complemental strand, 19242327 - 19242117
Alignment:
| Q |
81 |
tgttttggattttgcaggcataaatgtcctttgtggagtaggaatcctttcaaccccttatgctgctaaagaaggtggatgggtaggactttccatcttg |
180 |
Q |
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|||||||| ||||||||||||||||| |||||||| || |||||||||||| |||||||||| ||||||||||| |||| | |||||| ||||| |
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| T |
19242327 |
tgttttggtttttgcaggcataaatgctctttgtggggttggaatcctttcagtcccttatgctctcaaagaaggtggttgggctgcactttcaatctta |
19242228 |
T |
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| Q |
181 |
ttcatttttggaattctttctttttatactggattgctcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctg |
280 |
Q |
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| || ||| | | |||| ||||| ||||| ||||| ||||||| |||||||||||| ||||||| |||||||| || || || ||||||||||||| |
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| T |
19242227 |
ctgatattttcagtattttccttttacactggcttgctgttgcgttattgcttggacagtcaacctggacttgaaacttatcccgacattggccaagctg |
19242128 |
T |
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| Q |
281 |
cttttggtact |
291 |
Q |
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||||||||||| |
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| T |
19242127 |
cttttggtact |
19242117 |
T |
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