View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_12 (Length: 424)
Name: NF4035_high_12
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 31024263 - 31024669
Alignment:
| Q |
1 |
agaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataatgtgctgaatataa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31024263 |
agaggattgatgttcaatttcctatcagacaacttgttctaaatatccaaaattgaacaagttcaaaggtctaaacaatgtcataatgtgctgaatataa |
31024362 |
T |
|
| Q |
101 |
ctacattcagtctaggttaccatatatcatcacacaactgaaaaaggatgacaacccttagttcatgtacaaaagcatcaaaccatagagtactcttacc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31024363 |
ctacattcagtctaggttatcatatatcatcacacaactgaaaaaggatgacaacccttagttcatgtacaaaagcatcaaaccatagagtactcttacc |
31024462 |
T |
|
| Q |
201 |
aacactgggattactaccaactaaagtcgataagccttcaaatccacatcctacataaacaacgttaaacttaaatcatgttctaaatccagtaccaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
31024463 |
aacactgggattactaccaactaaagtcgataagccttcaaatccacatcctacataaacaacgttaaccttaattcatgttctaaatccactaccaaaa |
31024562 |
T |
|
| Q |
301 |
gat-aaacaagttttgcttaaaacaaaacttgccatagctctaatctattaacatgcatgttcatttttggaataattttaaagaagttagttactaagg |
399 |
Q |
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||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31024563 |
gataaaacaaattatgcttaaaacaaaacttgccatagctctaatctattaacatgcatgttca-ttttggaataattttaaagaagttagttactaagg |
31024661 |
T |
|
| Q |
400 |
aaactagt |
407 |
Q |
| |
|
|||||||| |
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| T |
31024662 |
aaactagt |
31024669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 31071372 - 31071494
Alignment:
| Q |
1 |
agaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataatgtgctgaatataa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
31071372 |
agaggattgatgttcaattttctatcagacaacttgttctaaatt--caaaattgaacaagttcaaaggtctaaacaatatcataatgtggtgaatataa |
31071469 |
T |
|
| Q |
101 |
ctacattcagtctaggttaccatat |
125 |
Q |
| |
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||||| |||||| |||||||||||| |
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| T |
31071470 |
ctacagtcagtccaggttaccatat |
31071494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31027872 - 31027966
Alignment:
| Q |
1 |
agaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataatgtgctgaa |
95 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
31027872 |
agaggattgatgttcaatttcctatcaaacaacttgttctatatatccaaaatcgaacaagttcaaaggtcaaaacaatgtcataatgtgctgaa |
31027966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 230 - 407
Target Start/End: Original strand, 31072395 - 31072563
Alignment:
| Q |
230 |
ataagccttcaaatccacatcctacataaacaacgttaaacttaaatcatgttctaaatccagtaccaaaagataaacaagttttgcttaaaacaaaact |
329 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||| ||||| ||||| |||||||| ||||||| |||||||||||||||||||| ||||||||| |||| | |
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| T |
31072395 |
ataagccttctaatctacatcctacgtaaacaaagttaaccttaa-tcatgttccaaatccactaccaaaagataaacaagttatgcttaaaataaaatt |
31072493 |
T |
|
| Q |
330 |
tgccatagctctaatctattaacatgcatgttcatttttggaataattttaaagaagttagttactaaggaaactagt |
407 |
Q |
| |
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||| |||| |||||||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
31072494 |
tgcaatag--ctaatctattaa----catgttca-ttttggaataa-cttaaacaagttagttacggaggaaactagt |
31072563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 31072332 - 31072383
Alignment:
| Q |
119 |
accatatatcatcacacaactgaaaaaggatgacaacccttagttcatgtac |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
31072332 |
accatatatcatcacacaactgaaaaaggatgacaaaccttagttcatgtac |
31072383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 31030278 - 31030315
Alignment:
| Q |
114 |
aggttaccatatatcatcacacaactgaaaaaggatga |
151 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
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| T |
31030278 |
aggttaccatatatcatcacacaagtgaaaaaggatga |
31030315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 31040265 - 31040321
Alignment:
| Q |
280 |
gttctaaatccagtaccaaaagataaacaagttttgcttaaaacaaaacttgccata |
336 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| || ||||| ||||||| |
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|
| T |
31040265 |
gttctaaatccacaatcaaaagataaacaagttttgcttacaataaaacctgccata |
31040321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21217281 - 21217209
Alignment:
| Q |
1 |
agaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaa |
75 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||| ||| |||||| |||||||||| |||||||| |||| |||||| |
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|
| T |
21217281 |
agagcattgatgttcaatttcctctcaaacatcttattctaa--atccaaaatttaacaagttcaaagttctaaa |
21217209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 253 - 353
Target Start/End: Original strand, 33559597 - 33559695
Alignment:
| Q |
253 |
acataaacaacgttaaacttaaatcatgttctaaatccagtaccaaaagataaacaagttttgcttaaaacaaaacttgccatagctctaatctattaac |
352 |
Q |
| |
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|||| ||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||| |
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| T |
33559597 |
acattaacaaagttaaccttaaatcatgttctgtatccactaccaaaagataaacaagttatgcttaaaataaaatttgccatag--ctaatctattaac |
33559694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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