View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_17 (Length: 340)
Name: NF4035_high_17
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 31 - 329
Target Start/End: Complemental strand, 20669402 - 20669108
Alignment:
| Q |
31 |
ttcatgctcttacgtcttcaccctcaatgaatttctggtaactgtgattaattttttaataaactatcaatttatcccataagctatcacactctctttt |
130 |
Q |
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| T |
20669402 |
ttcatgctcttacatcttcaccctcaatgaatttctggtaactgtgattaattttttaataaactatcaatttatcccataagctataacactctctttt |
20669303 |
T |
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| Q |
131 |
tcaaaaattcaacaatgtagtctccaacatcttaacagtgcagcgactcaattgaaatatttttatatgttttaaatatgtttttgtatagcttgcaggt |
230 |
Q |
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| T |
20669302 |
tcaaaaattcaacaatgtagtctccaacatcttaaca--gcagcgactcaattgaaatatttt--tatgttttaaatatgcttttgtatagcttgcaggt |
20669207 |
T |
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| Q |
231 |
ttgagttcattttttgaaccgcataataggaaggacgacagttgcgtcccgtgttggagagaccatgttaattattacaaggtttttattatttcctat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20669206 |
ttgagttcattttttgaaccgcataataggaaggacgacagttgtgtcccgtgttggagagacaatgttaattattacaaggtttttattatttcctat |
20669108 |
T |
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