View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_23 (Length: 280)
Name: NF4035_high_23
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 31596692 - 31596955
Alignment:
| Q |
1 |
tcataaggaccaaaaagtaatgtctaattactacttaactctacgcataagccattgagcagtgctatatctcgcgatacaaaagattcgcgaaagccat |
100 |
Q |
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| T |
31596692 |
tcataaggaccaaaaaaaaa-gtctaattactacttaactctacgcttaagccattgagcagtgctatatctcgctatacaaaagattcgcgaaagccat |
31596790 |
T |
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| Q |
101 |
gaaaacacgggtgtcaatatgtaagaacaaaataaagaaactttcaggatgatacctttcactatacattaagcaatttcctaacacattaggggataag |
200 |
Q |
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| T |
31596791 |
gaaaacatgggtgtcaatatgtaagaacaaaataaagaaactttcaggatgatacctttcactatacattaagcaatttcctaacacattaggggataag |
31596890 |
T |
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| Q |
201 |
ttgcaatattacagcttagttgtagaaacaaaaatatataggagtttgagaaagtgataatattt |
265 |
Q |
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| T |
31596891 |
ttgcaatattacagcttagttgtagaaacaaaaatatataggagtttgagaaagtgataatattt |
31596955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 31590661 - 31590723
Alignment:
| Q |
197 |
taagttgcaatattacagcttagttgtagaaacaaaaatatataggagtttgagaaagtgata |
259 |
Q |
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| T |
31590661 |
taagttgcaatattcgaacttaattgtagaaacaaacataaacaagagtttgagaaagtgata |
31590723 |
T |
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