View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_29 (Length: 250)
Name: NF4035_high_29
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 32824676 - 32824885
Alignment:
| Q |
35 |
aaggacccaacaaaaacacaaacacactcgctatcatttttc----aataggggatgggaaccacaaacaaagaaactaaacctcttcttgacatgaagg |
130 |
Q |
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| T |
32824676 |
aaggacccaacaaaaacacaaacacactcgctataatttttcgatagataggggatgggaaccacaaacaaagaaactaaacctcttcttgacatgaagg |
32824775 |
T |
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| Q |
131 |
tgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatttctacgtaaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824776 |
tgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatttctacgtaaa |
32824875 |
T |
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| Q |
231 |
aacggttcat |
240 |
Q |
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|||||||||| |
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| T |
32824876 |
aacggttcat |
32824885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 32808071 - 32808190
Alignment:
| Q |
121 |
gacatgaaggtgacaatccacaaaacttcaatgatttttccatcaaaacaaaccgagaacaaatccatgttcttatcaaatatagacaaggtactcaatt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||| ||||||||||||| ||||||| || ||||||| |
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| T |
32808071 |
gacatgaaggtgacaatccacaaaacttcaatgattttcccatcaaaacaaatcgaaaagaaatccttgttcttatcaaacatagacagagttctcaatt |
32808170 |
T |
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| Q |
221 |
tctacgtaaaaacggttcat |
240 |
Q |
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| | || |||||||||||| |
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| T |
32808171 |
ttcatgtgaaaacggttcat |
32808190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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