View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4035_high_34 (Length: 247)
Name: NF4035_high_34
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 40250970 - 40250754
Alignment:
| Q |
14 |
cacagacttaatacacataaatcaccgtaattcaagaatcgcatacaacacagtgcccagatgccagagcaacagtcactctcctctcattttcaccatg |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40250970 |
cacacacttaatacacataaatcaccgtaattcaagaatcgcatacaacacagtgcccagatgccagagcaacagtcactctcctctcattttcaccatg |
40250871 |
T |
|
| Q |
114 |
aaacaaccaccaccaactaaatcatcaccgtccactcctccaccgcctcccacaccaaccactgtgatccatccatgtcgtaagcccatagattcttgat |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40250870 |
aaacaaccaccaccaactaaatcgtcaccgtccactcctccaccccctcccacaccaaccattgtgatccatccatgtcgtaagcccatagattcttgat |
40250771 |
T |
|
| Q |
214 |
aatctcgcttcgattct |
230 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
40250770 |
aatctcacttcgattct |
40250754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 31625120 - 31624905
Alignment:
| Q |
14 |
cacagacttaatacacataaatcaccgtaattc--aagaatcgcatacaacacagtgcccagatgccagagcaacagtcactctcct---ctcattttca |
108 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||| ||| ||||||| | |||||||| |||||||||| |
|
|
| T |
31625120 |
cacacacttattacacataaatcaccataatttttaagcatcgcatacaacacagaacccag---ccaaagcaacactaactctccttccctcattttca |
31625024 |
T |
|
| Q |
109 |
ccatgaaacaaccaccaccaactaaatcatcaccgtccactcctccaccgcctcccacaccaaccactgtgatccatccatgtcgtaagcccatagattc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
31625023 |
ccatgaaacaaccaccaccaactaaataatcaccgttcactcctccaccgcctcccacaccaaccaccg---tccatccatgtcgtaagcccactgattc |
31624927 |
T |
|
| Q |
209 |
ttgataatctcgcttcgattct |
230 |
Q |
| |
|
||||||||||| ||| |||||| |
|
|
| T |
31624926 |
ttgataatctcactttgattct |
31624905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 22622764 - 22622604
Alignment:
| Q |
69 |
cccagatgccagagcaacagtcactctcct---ctcattttcaccatgaaacaaccaccaccaactaaatcatcaccgtccactcctccaccgcctccca |
165 |
Q |
| |
|
|||||||| |||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22622764 |
cccagatgtcagagcaacactcgctctccttctctcattttcaccatgaaacaaccaccaccaactaaatcatcaccgtccac----ccaccgcctccca |
22622669 |
T |
|
| Q |
166 |
caccaaccactgtgatccatccatgtcgtaagcccatagattcttgataatctcgcttcgattct |
230 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22622668 |
caccaaacaccgtgatccatccatgtcgtaagcccatcgattcttgataatctcgcttcgattct |
22622604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 5687613 - 5687767
Alignment:
| Q |
76 |
gccagagcaacagtcactctcct---ctcattttcaccatgaaacaaccaccaccaactaaatcatcaccgtccactcctccaccgcctcccacaccaac |
172 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5687613 |
gccagagcaacactaactctccttccctcattttcaccatgaaacaaccaccaccaactaaatcatcaccgttcactcctccactgcctcccacaccaac |
5687712 |
T |
|
| Q |
173 |
cactgtgatccatccatgtcgtaagcccatagattcttgataatctcgcttcgattct |
230 |
Q |
| |
|
||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5687713 |
caccg---tccatccatgtcgtaagcccactgattcttgataatctcgcttcgattct |
5687767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 46674664 - 46674454
Alignment:
| Q |
19 |
acttaatacacataaatcaccgtaattc--aagaatcgcatacaacacagtgcccagatgccagagcaacagtcactctcct---ctcattttcaccatg |
113 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||| ||| ||||||| | |||||||| |||||||||| |||| |
|
|
| T |
46674664 |
acttattacacataaatcaccataatttttaagcatcgcatacaacacagaaaccat---ccatagcaacactaactctccttccctcattttcatcatg |
46674568 |
T |
|
| Q |
114 |
aaacaaccaccaccaactaaatcatcaccgtccactcctccaccgcctcccacaccaaccactgtgatccatccatgtcgtaagcccatagattcttgat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
46674567 |
aaacaaccaccaccaactaaatcatcaccgttcactctttcaccgcctcccacaccaaccaccg---tccatccatgtcgtaagcccactgattcttgat |
46674471 |
T |
|
| Q |
214 |
aatctcgcttcgattct |
230 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46674470 |
aatctcgcttcgattct |
46674454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 36822461 - 36822521
Alignment:
| Q |
133 |
aatcatcaccgtccactcctccaccgcctcccacaccaaccactgtgatccatccatgtcg |
193 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||| ||||||| |||||||||||| |||| |
|
|
| T |
36822461 |
aatcagcaccgtccactccaccaccgcctccaacatcaaccaccgtgatccatccacgtcg |
36822521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University