View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_40 (Length: 235)
Name: NF4035_high_40
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_40 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 25977603 - 25977822
Alignment:
| Q |
18 |
tttgctatctaaacacttccagcagatagtcaaaatgagttagcgaggaggaccaaatcaaagggaaagcaatgaagtgagtaaaattgaacctaatatg |
117 |
Q |
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| T |
25977603 |
tttgcaatctaaacacttccagcagatagtcaaaatgagttagcgaggaagaccaaatcaaagggaaagcaatgaagtgagtaaaattgaacctaatatg |
25977702 |
T |
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| Q |
118 |
agtgaagaaatatgggaagcaacctataacctttgcaaatcaattatgaagggcaaaacactttgtgatctgatggcgtatgtttgaggt--agagagtc |
215 |
Q |
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| T |
25977703 |
agtgaagaaatatgggaagcaacctataacctttgcaaatcaattatgaagggcaaaacactttgtgatctgatggcgtatgtttgaggtagagagagtc |
25977802 |
T |
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| Q |
216 |
gatttcaccaaaattaaagc |
235 |
Q |
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| T |
25977803 |
gatttcaccaaaattaaagc |
25977822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 25963428 - 25963584
Alignment:
| Q |
68 |
gaccaaatcaaagggaaagcaatgaagtgagtaaaattgaacctaatatgagtgaagaaatatgggaagcaacctataacctttgcaaatcaattatgaa |
167 |
Q |
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|||| ||||||||||||||||||| |||||||||||| | | ||||||||||||||| |||||| ||| |||| |||| |||||||||||||||||||| |
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| T |
25963428 |
gacctaatcaaagggaaagcaatggagtgagtaaaatcgcaactaatatgagtgaaggaatatgagaatcaactaataatctttgcaaatcaattatgaa |
25963527 |
T |
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| Q |
168 |
gggcaaaacactttgtgatctgatggcgtatgtttgaggta--gagagtcgatttca |
222 |
Q |
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| T |
25963528 |
gggcaaaacacttggtgatctaatggtttatgtttgaggtagggagagtcgatttca |
25963584 |
T |
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