View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_43 (Length: 221)
Name: NF4035_high_43
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 41856154 - 41855971
Alignment:
| Q |
23 |
gagtattttaattttaattaaatattatcaaatatgttaaaaatggagttagttttttcataattgtatcaaaacgtaattcataaatatcaaaagaaat |
122 |
Q |
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| T |
41856154 |
gagtattttaattttaattaaatattatcaaatatgttaaaaatggagttagttttttcataattgtatcaaaatgtaattcataaatatcaaaagaaat |
41856055 |
T |
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| Q |
123 |
ttgggttggtgaggatttgggtaagataaattcatgttttcttaacaactttgaaatgtttgaatatacgctggcggaactttc |
206 |
Q |
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| T |
41856054 |
ttgggttggcgaggatttggttaagataaagtcatgttttcttaacaactttgaaatgtttgaatatacactggcggaactttc |
41855971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 12789964 - 12790114
Alignment:
| Q |
29 |
tttaattttaattaaatattatcaaatatgttaaaaatggagttagttttttcataattgtatcaaaacgtaattcataaatatcaaaagaaatttgggt |
128 |
Q |
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| T |
12789964 |
tttaattttaattaaatattatcatatattttagttatggatttagttttttcataattgcatcataacttggttcataaacatgaaaagaaatttgggt |
12790063 |
T |
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| Q |
129 |
tggtgaggatttgggtaagataaattcatgttttcttaacaactttgaaatgt |
181 |
Q |
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| T |
12790064 |
tggggaggatttgggtaagataaatt-atg-tttcataacaactttgaaatgt |
12790114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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