View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_44 (Length: 211)
Name: NF4035_high_44
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 42688442 - 42688619
Alignment:
| Q |
18 |
gttacatatactgcctctcacaagctactttcattggctggtgtaaaggtagcctcctatccatagttttctgtctgtgtatttcacttcattcagttgg |
117 |
Q |
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| T |
42688442 |
gttacatatactgcctctcacaagctactttcattggctggtgtaaaggtagcctcctatccatagttttctgtctgtgtatttcacttcattcagttgg |
42688541 |
T |
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| Q |
118 |
cttaggtataccaaattccgatattgattcaatactaataacttatcaatttacatgttccttatatttgtgtttcat |
195 |
Q |
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| T |
42688542 |
cttaggtataccaaattccgatattgattcaatactaataacttatcaatttgcatgttccttatatttgtgtttcat |
42688619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 21186002 - 21186051
Alignment:
| Q |
18 |
gttacatatactgcctctcacaagctactttcattggctggtgtaaaggt |
67 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21186002 |
gttacatatactgcctctcacaagttactttcattggctggtgtaaaggt |
21186051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27119596 - 27119645
Alignment:
| Q |
18 |
gttacatatactgcctctcacaagctactttcattggctggtgtaaaggt |
67 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27119596 |
gttacatatactgcctctcacaagttactttcattggctggtgtaaaggt |
27119645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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