View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_6 (Length: 455)
Name: NF4035_high_6
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 34 - 451
Target Start/End: Original strand, 23345268 - 23345675
Alignment:
| Q |
34 |
ctaaccgtccttactgtttgagcaccatattgcagccgtcgtcgagaatccaatcaaattatgattgacatgagatgtatttggatatattatgaagtag |
133 |
Q |
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| T |
23345268 |
ctaaccgtccttactgtttgagcaccatattgcagccgtcg---agaatccaatccaattatgattgacatgagatgtatttggatatat---gaagtag |
23345361 |
T |
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| Q |
134 |
ctagtaggaaaagaaaaggaaaatagtgagtctgcataatattattcagtctcaaacctatttccccatttagagtgaagttccataacaagtctttctt |
233 |
Q |
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| T |
23345362 |
----taggaaaagaaaaggaaaatagtgagtctgcataatattattcagtctcaaacctatttccccatttagagtgaagttccataacaagtctttctt |
23345457 |
T |
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| Q |
234 |
cttgtggtgtcatcttgccacgtttgagatcagggtgaagataattaacccaacgtaacctgcaactcttacctgatctactcaaacctacaacaaagtg |
333 |
Q |
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| T |
23345458 |
cttgtggtgtcatcttgccacgtttgagatcagggtgaagataattaacccaacgtaacctgcaactcttacctgatctactcaaacctacaacaaagtg |
23345557 |
T |
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| Q |
334 |
tgagaaacagaaaaacatggttaaaggaattaatgcttctattataattcagcatgcccttataagcatacctatttattactctctcccgccaccttca |
433 |
Q |
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| T |
23345558 |
tgagaaacagaaaaacatggttaaaggaattaatgcttctattataattcagcatgcccttataagcatacctatttattactctctcccgccaccttca |
23345657 |
T |
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| Q |
434 |
aacctgaaacctttgcta |
451 |
Q |
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| T |
23345658 |
aacctgaaacctttgcta |
23345675 |
T |
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Back To:
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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 188 - 330
Target Start/End: Original strand, 41174918 - 41175060
Alignment:
| Q |
188 |
aacctatttccccatttagagtgaagttccataacaagtctttcttcttgtggtgtcatcttgccacgtttgagatcagggtgaagataattaacccaac |
287 |
Q |
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| T |
41174918 |
aacctatttccccatttggattgaagctcaaggacaaggcgttcttcatgaggtgtcatctttcctcttttgagaccaggatgaaggtaattaacccatc |
41175017 |
T |
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| Q |
288 |
gtaacctgcaactcttacctgatctactcaaacctacaacaaa |
330 |
Q |
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| T |
41175018 |
ttaacctacaactcttacctgttctattcaaacctacaacaaa |
41175060 |
T |
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