View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4035_high_8 (Length: 443)

Name: NF4035_high_8
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4035_high_8
NF4035_high_8
[»] chr4 (5 HSPs)
chr4 (1-344)||(43208616-43208968)
chr4 (345-424)||(43208508-43208583)
chr4 (146-245)||(39487933-39488031)
chr4 (150-245)||(52246245-52246340)
chr4 (6-66)||(39487790-39487850)
[»] chr2 (1 HSPs)
chr2 (150-249)||(41415544-41415643)
[»] chr8 (1 HSPs)
chr8 (154-252)||(42995915-42996013)
[»] chr5 (1 HSPs)
chr5 (151-247)||(39125340-39125436)
[»] chr1 (1 HSPs)
chr1 (28-76)||(38299525-38299573)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 43208968 - 43208616
Alignment:
Q  1 agtagatactagccaataaagggggacaaaaatcaaaaactataatctaattatcaaaagcagctttaaatttggccaaccg-------caagagttttc 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||||    
T  43208968 agtagatactagccaataaagggggacaaaaatcaaaaactataatctaattatcaaaagtagctttaaatttggccaaccgattgacgcaagagttttc 43208869  T
Q  94 tttctgcaaggtgtgaataacaacaatgttttcgtagtcagcgttcaacagagatataatgtaatcaacaatcacatcatatgggtgggtatgcaaaact 193  Q
    |||||| |||||||||| || |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43208868 tttctgtaaggtgtgaacaagaacaatgtttttatagtcagccttcaacagagatataatgtaatcaacaatcacatcatatggatgggtatgcaaaact 43208769  T
Q  194 ttctcttcgatgaattttagcgcgtagagagaattagattcacaaattatatctctata--tatactctatccatatacgcgtgatgtcatatacgcctt 291  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  43208768 ttctctttgatgaattttagcgcgtagagagaattagatttacaaattatatctctatatatatactctatccatatacgcgtgatgtcatatacgcctt 43208669  T
Q  292 tctatttttattcaaataacacaattcatatattttctttgtatggtacaatt 344  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  43208668 tctatttttattcaaagaacacaattcatatattttctttgtatagtacaatt 43208616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 43208583 - 43208508
Alignment:
Q  345 catatatagtacaaatttccattattatacttgatctccgccagagtatgtatatgtgggtacataatacaggtcctctc 424  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||    
T  43208583 catatatagtacaaatttccattattatacttaatctccgccagagtatg----tgtgggtacataatacaggtcctctc 43208508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 39487933 - 39488031
Alignment:
Q  146 gatataatgtaatcaacaatcacatcatatgggtgggtatgcaaaactttctcttcgatgaattttagcgcgtagagagaattagattcacaaattatat 245  Q
    |||||||||||||||||||||  | ||||| |||||||  || || ||  ||||| ||||||||||| |||| ||||||||| ||||||| |||||||||    
T  39487933 gatataatgtaatcaacaatcgaaacatataggtgggtccgcgaa-ctccctctttgatgaattttatcgcgaagagagaatcagattcataaattatat 39488031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 52246340 - 52246245
Alignment:
Q  150 taatgtaatcaacaatcacatcatatgggtgggtatgcaaaactttctcttcgatgaattttagcgcgtagagagaattagattcacaaattatat 245  Q
    |||| |||||||||||| || ||||| ||||||||||| | ||||| ||||  || |||||||  | | ||||||||| |||||||||||||||||    
T  52246340 taatataatcaacaatcgcaacatattggtgggtatgcgagactttgtctttaataaattttattgtggagagagaatcagattcacaaattatat 52246245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 39487790 - 39487850
Alignment:
Q  6 atactagccaataaagggggacaaaaatcaaaaactataatctaattatcaaaagcagctt 66  Q
    |||||| ||||||||||||  ||||||||||||| | ||||||  ||||||| ||||||||    
T  39487790 atactaaccaataaaggggagcaaaaatcaaaaattgtaatctccttatcaagagcagctt 39487850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 41415643 - 41415544
Alignment:
Q  150 taatgtaatcaacaatcacatcatatgggtgggtatgcaaaactttctcttcgatgaattttagcgcgtagagagaattagattcacaaattatatctct 249  Q
    |||||||||||||||||||| |||||| ||||||||||||||||  ||||| ||||||||||||| || ||||||||| | |||||||||||||||||||    
T  41415643 taatgtaatcaacaatcacaacatatgagtgggtatgcaaaactccctctttgatgaattttagcacggagagagaatcaaattcacaaattatatctct 41415544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 42996013 - 42995915
Alignment:
Q  154 gtaatcaacaatcacatcatatgggtgggtatgcaaaactttctcttcgatgaattttagcgcgtagagagaattagattcacaaattatatctctata 252  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||| ||||||||||||| || | ||| |||  |||||||||||||||||| ||||    
T  42996013 gtaatcaacaatcgcaacatatgggtgggtatgcaaaacttcctctttgatgaattttagcacgaaaagataatctgattcacaaattatatctttata 42995915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 39125340 - 39125436
Alignment:
Q  151 aatgtaatcaacaatcacatcatatgggtgggtatgcaaaactttctcttcgatgaattttagcgcgtagagagaattagattcacaaattatatct 247  Q
    ||||||||||||||||||| || || | || |||||  |||||  ||||| ||| ||||| | |||| ||| ||||||| |||||||||||||||||    
T  39125340 aatgtaatcaacaatcacaacacatagatgtgtatgtgaaactccctctttgataaatttgaccgcggagaaagaattaaattcacaaattatatct 39125436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 38299525 - 38299573
Alignment:
Q  28 aaaaatcaaaaactataatctaattatcaaaagcagctttaaatttggc 76  Q
    |||||||||||| | |||||| |||||||| ||||| ||||||||||||    
T  38299525 aaaaatcaaaaagtctaatctcattatcaagagcagttttaaatttggc 38299573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University