View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_high_9 (Length: 441)
Name: NF4035_high_9
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 299 - 419
Target Start/End: Original strand, 44840918 - 44841038
Alignment:
| Q |
299 |
ctcatttcatttcttgttttctaactattattannnnnnnctttcattttatgagcagagaaggaaaaaagcatgcaaactacacaaaccacactatctt |
398 |
Q |
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| T |
44840918 |
ctcatttcatttcttgttttctaactattattatttttttctttcattttataagcagagaaagaaaaaagcatgcaaactgcacaaaccacactatctt |
44841017 |
T |
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| Q |
399 |
tgatcactggtgagaagagca |
419 |
Q |
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| T |
44841018 |
tgatcactggtgagaagagca |
44841038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 44840637 - 44840736
Alignment:
| Q |
16 |
aatatacagagaaatgttaacctaatgaagcaggtatacatatacacacactcaaaaaggggcatcataatcaacacttggttacgaactcagacagaac |
115 |
Q |
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| T |
44840637 |
aatatacagagaaatgttaacctaatgaagcaagtatacatatacac--actcaaaaaggggcattataatcaacacttggttacgaactcagacagaac |
44840734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 44840785 - 44840820
Alignment:
| Q |
166 |
ctagttcactttttacactgcttcatcacaaccgtt |
201 |
Q |
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| T |
44840785 |
ctagttcactttttacactgcttcatcacaaccgtt |
44840820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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