View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_15 (Length: 366)
Name: NF4035_low_15
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 3571233 - 3570885
Alignment:
| Q |
12 |
agagaagaggtacatacaaaaggcactttgatgtcaaagtcagagtagacataatatagtagaagaataaacgagtataaagatgagagatctcaattta |
111 |
Q |
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| T |
3571233 |
agagaagaggtacatacaaaaggcactttgatgtcaaagtcagagtagacataatatagtagaagagtaaacgagtataaagatgagagatctcaattta |
3571134 |
T |
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| Q |
112 |
gggcaagacgtgctccttaacttagtcaatttatcatcagattatattcactcgtctatctttgtgcgacattagctctata------taatggacgaaa |
205 |
Q |
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| T |
3571133 |
gggcaagacgtgctccttaacttaatcaatttatcatcagattatattcactcgtctatatttgtgcgacattagctctatataatattaatggaccaaa |
3571034 |
T |
|
| Q |
206 |
aaactttataccaagcacaatctccgagaatcgagcctaaaggacgaaggcactctaatgacc----ggatgaacaaacagattaaaaccaaacacaact |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |
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| T |
3571033 |
aaactttataccaagcacaatctccgagaatcgagcctaaaggacgaaggcactctaatgaccggatggatgaacaaacagattaataccaaacacaatt |
3570934 |
T |
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| Q |
302 |
ccggtaaacctaaaaggtcttcgacactattgagcctagagggaaacgg |
350 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
3570933 |
ccggtaaacctaaaaggtcttcgacgctattgagcccagagggaaacgg |
3570885 |
T |
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