View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_2 (Length: 726)
Name: NF4035_low_2
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Complemental strand, 34216665 - 34215950
Alignment:
| Q |
1 |
ttctacaccacttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216665 |
ttctacaccacttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagt |
34216566 |
T |
|
| Q |
101 |
cccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216565 |
cccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttggga |
34216466 |
T |
|
| Q |
201 |
cttctgtcgctgctgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttacggagatgagtcc |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34216465 |
cttctgtcgctgccgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttaaggagatgagtcc |
34216366 |
T |
|
| Q |
301 |
ctcgcttgcccaactcagtaaatcacaaacggatgtttccaccaattcgttcaaccttgccttgcaatatgttatagatgaaattccaaagggaaggttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216365 |
ctcgcttgcccaactcagtaaatcacaaacggatgtttccaccaattcgttcaaccttgccttgcaatatgttatagatgaaattccaaagggaaggttg |
34216266 |
T |
|
| Q |
401 |
cctcagctcactagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattcaaatgtagtggagcaaacactttcaggattctcaggac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216265 |
cctcagctcactagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattcaaatgtagtggagcaaacactttcaggattctcaggac |
34216166 |
T |
|
| Q |
501 |
acgagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34216165 |
acgagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgacgtgcatgagaatgccgagttagctctctccgcttctg |
34216066 |
T |
|
| Q |
601 |
ttaggtagatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34216065 |
ttaggtagatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaaatttctgttgt |
34215966 |
T |
|
| Q |
701 |
ttcggcctttgcttct |
716 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
34215965 |
ttcggccattgcttct |
34215950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 503 - 713
Target Start/End: Original strand, 11212583 - 11212788
Alignment:
| Q |
503 |
gagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgtt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| || ||||||||||| ||||||||||||||| |||| |
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| T |
11212583 |
gagcgttctagagacttctgtagctgctgttccgcttatctttttagtagagtgcgttgacgcacatgagaacgc-----tagctctctccgcttatgtt |
11212677 |
T |
|
| Q |
603 |
aggtagatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgttt |
702 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
11212678 |
agggagatgagtccctcgccaacccagatcaatgaatctcaatctgaggtgcatacaggttcgccccacctgcactcacaagccaaagtttctgctgttt |
11212777 |
T |
|
| Q |
703 |
cggcctttgct |
713 |
Q |
| |
|
||||| ||||| |
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|
| T |
11212778 |
cggccattgct |
11212788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 607 - 713
Target Start/End: Original strand, 18485088 - 18485194
Alignment:
| Q |
607 |
agatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgtttcggc |
706 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| |||||| ||||||||||| |||| |||| ||||||||||||||||||| |||||| |||| |||| |
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| T |
18485088 |
agatgagcccctcgcttgcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgttacggc |
18485187 |
T |
|
| Q |
707 |
ctttgct |
713 |
Q |
| |
|
| ||||| |
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|
| T |
18485188 |
cattgct |
18485194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 19552189 - 19552380
Alignment:
| Q |
22 |
ttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttcc |
121 |
Q |
| |
|
|||||||||||| |||||||| | ||||| ||||||||||||||||| || || |||||||| ||||| | |||||||| ||| || ||| || |
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|
| T |
19552189 |
ttctgccaactcgttcagctttgcgttgcaaaatgttacagatgaaatccctcaaggaaggttacctcaggcttctagtcccatgttagagttg---tct |
19552285 |
T |
|
| Q |
122 |
gaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgctgctgt |
216 |
Q |
| |
|
|| ||||| ||| |||||||||||||||| ||||| || ||| | |||||| ||||||| |||| ||||||| || ||||| ||||||||| |
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| T |
19552286 |
gaagtagcgcacaatgacgtgcattcacatggagtggaacaaacacaacaggactctcggaccgtacaggttcttgagatttctgccgctgctgt |
19552380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 27457937 - 27457810
Alignment:
| Q |
20 |
gtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggttt |
119 |
Q |
| |
|
||||| |||||||| |||||||| ||||||| ||||||| |||||||| || || |||||||| ||||| ||| |||||| | |||||| || | |
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| T |
27457937 |
gtttccgccaactcgttcagctttgcattgcataatgttatggatgaaatccctcaaggaaggttacctcaggccgttagtcctgtgttggagctg---t |
27457841 |
T |
|
| Q |
120 |
ccgaggtagcacacgatgacgtgcattcaca |
150 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |
|
|
| T |
27457840 |
ccgaagtagcgcacgatgacgtgcattcaca |
27457810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 21565079 - 21565119
Alignment:
| Q |
106 |
gttggaattggtttccgaggtagcacacgatgacgtgcatt |
146 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
21565079 |
gttggaattggtttccgaggtagcccacgatgacgtgcatt |
21565119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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