View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4035_low_20 (Length: 311)

Name: NF4035_low_20
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4035_low_20
NF4035_low_20
[»] chr6 (2 HSPs)
chr6 (114-295)||(34216665-34216846)
chr6 (138-172)||(14385448-14385482)
[»] chr7 (1 HSPs)
chr7 (185-266)||(11482902-11482983)
[»] chr4 (2 HSPs)
chr4 (137-240)||(19551447-19551550)
chr4 (138-173)||(3009039-3009074)
[»] chr3 (2 HSPs)
chr3 (214-265)||(14679836-14679887)
chr3 (131-266)||(21093449-21093584)
[»] scaffold0061 (1 HSPs)
scaffold0061 (214-266)||(38085-38137)
[»] scaffold0017 (1 HSPs)
scaffold0017 (214-266)||(160642-160694)
[»] chr2 (2 HSPs)
chr2 (214-266)||(20380961-20381013)
chr2 (216-266)||(25976639-25976689)
[»] scaffold0567 (1 HSPs)
scaffold0567 (138-173)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (214-265)||(12090-12141)
[»] scaffold0125 (1 HSPs)
scaffold0125 (214-265)||(31435-31486)
[»] chr8 (2 HSPs)
chr8 (138-172)||(17271738-17271772)
chr8 (137-173)||(45270546-45270582)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 114 - 295
Target Start/End: Complemental strand, 34216846 - 34216665
Alignment:
Q  114 ggtaccattgatttgaagccagatctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34216846 ggtaccattgatttgaagccagatctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatcc 34216747  T
Q  214 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaatatatctctgttgcaagaacagacactctct 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34216746 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaatatgtctctgttgcaagaacagacactctct 34216665  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 14385482 - 14385448
Alignment:
Q  138 ctccttcgtctctcccaatggacgaaggattttaa 172  Q
    |||||||| ||||||||||||||||||||||||||    
T  14385482 ctccttcgcctctcccaatggacgaaggattttaa 14385448  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 11482902 - 11482983
Alignment:
Q  185 gaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 266  Q
    |||||||||||| ||||||||||| | | || ||||||| |||||||||||||||||| |||||||||||  ||||||||||    
T  11482902 gaagcagactcatgcttctatctgaacccgtatggttgaattaccgcaagaatattggtgggaacaaacaccgaaggaaata 11482983  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 19551447 - 19551550
Alignment:
Q  137 tctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaa 236  Q
    ||||||||||||||| |||| ||||||||| |||||| | |||||| ||||||| ||||||||||| || |||||  | |||||||| || || ||||||    
T  19551447 tctccttcgtctctcacaatagacgaaggactttaatcattattcatagaagcaaactcacgcttccatttggattcgcttggttgaattgccccaagaa 19551546  T
Q  237 tatt 240  Q
    ||||    
T  19551547 tatt 19551550  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 3009074 - 3009039
Alignment:
Q  138 ctccttcgtctctcccaatggacgaaggattttaat 173  Q
    |||||||| |||||||||||||||||||||||||||    
T  3009074 ctccttcgcctctcccaatggacgaaggattttaat 3009039  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 14679887 - 14679836
Alignment:
Q  214 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 265  Q
    |||||||||| ||||||||||| |||||||||||||  ||||||||||||||    
T  14679887 gtttggttgagttaccgcaagagtattggcgggaacgtacattgaaggaaat 14679836  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 266
Target Start/End: Original strand, 21093449 - 21093584
Alignment:
Q  131 gccagatctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccg 230  Q
    ||||| |||||||||| |||||||||||   || || |||  | | ||||||||||| |||||||| ||||| || |||||| | ||||| || |||||     
T  21093449 gccaggtctccttcgtttctcccaatggctaaaagacttttctcattattcacagaaccagactcatgcttccatttggatccgcttggtcgaattacca 21093548  T
Q  231 caagaatattggcgggaacaaacattgaaggaaata 266  Q
    |||||||||| || |||||  || ||||||||||||    
T  21093549 caagaatattagcaggaacgtactttgaaggaaata 21093584  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 38085 - 38137
Alignment:
Q  214 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 266  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  38085 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 38137  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 160694 - 160642
Alignment:
Q  214 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 266  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  160694 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 160642  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 20380961 - 20381013
Alignment:
Q  214 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 266  Q
    ||||||| || ||||||||||| ||||||||||| | ||||||||||||||||    
T  20380961 gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata 20381013  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 25976689 - 25976639
Alignment:
Q  216 ttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata 266  Q
    ||||| || ||||||||||| ||||||||||||| ||| ||||||||||||    
T  25976689 ttggtggagttaccgcaagagtattggcgggaacgaaccttgaaggaaata 25976639  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 173
Target Start/End: Original strand, 839 - 874
Alignment:
Q  138 ctccttcgtctctcccaatggacgaaggattttaat 173  Q
    |||||||| |||||||||||||||||||||||||||    
T  839 ctccttcgcctctcccaatggacgaaggattttaat 874  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 12090 - 12141
Alignment:
Q  214 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 265  Q
    |||||||||| ||||||||||| ||||||||||| |  ||||||||||||||    
T  12090 gtttggttgagttaccgcaagagtattggcgggagcgtacattgaaggaaat 12141  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 31486 - 31435
Alignment:
Q  214 gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat 265  Q
    |||||||||| ||||||||||| ||||||||||||   ||||||||||||||    
T  31486 gtttggttgagttaccgcaagagtattggcgggaatgtacattgaaggaaat 31435  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 17271738 - 17271772
Alignment:
Q  138 ctccttcgtctctcccaatggacgaaggattttaa 172  Q
    |||||||| ||||||||||||||||||||||||||    
T  17271738 ctccttcgcctctcccaatggacgaaggattttaa 17271772  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 45270582 - 45270546
Alignment:
Q  137 tctccttcgtctctcccaatggacgaaggattttaat 173  Q
    |||||||||||| || |||||||||||||||||||||    
T  45270582 tctccttcgtctttctcaatggacgaaggattttaat 45270546  T

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