View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_23 (Length: 283)
Name: NF4035_low_23
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 49771049 - 49771292
Alignment:
| Q |
18 |
atatgggtgctctattcttcatactaattgtaattatgttcaatggatactccgagctatcgatgttcataatgaaactcccagttttctataagcaaag |
117 |
Q |
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| T |
49771049 |
atatgggtgctctattcttcatactaattgtaattatgttcaatggatactccgagctatcgatgttcataatgaaactcccagttttctataagcaaag |
49771148 |
T |
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| Q |
118 |
ggaccttcttcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttggtatttgggttgtgttgact |
217 |
Q |
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| T |
49771149 |
ggaccttctgcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttggtatttgggttgtgttgact |
49771248 |
T |
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| Q |
218 |
tactatgtaatcggatttgatccatgttttcaaaggtgggaata |
261 |
Q |
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| T |
49771249 |
tactatgtaatcggatttgatccatgttttgaaaggtgggaata |
49771292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 2885133 - 2885227
Alignment:
| Q |
103 |
tttctataagcaaagggaccttcttcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttg |
197 |
Q |
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| T |
2885133 |
tttctacaagcaaagagaccttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacctttctggaagttg |
2885227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 2899398 - 2899293
Alignment:
| Q |
103 |
tttctataagcaaagggaccttcttcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttggtatt |
202 |
Q |
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| T |
2899398 |
tttctacaagcaaagagaccttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacatttctggaagttgctgtt |
2899299 |
T |
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| Q |
203 |
tgggtt |
208 |
Q |
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|||||| |
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| T |
2899298 |
tgggtt |
2899293 |
T |
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