View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4035_low_25 (Length: 264)
Name: NF4035_low_25
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_25 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 8998891 - 8999154
Alignment:
| Q |
1 |
ccttctacccaattggttatttgtgtctggtgtcccttcaaacaataaaacaaacgaaatcagttttgtcctttttcttttctaccacgttgttctttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8998891 |
ccttctacccaattggttatttgtgtctggtgtcccttcaaacaataaaacaaacgaaatcagttttgtcctttttcttttctaccacgttgttctttta |
8998990 |
T |
|
| Q |
101 |
cataatttactccctcctctttacaataaattacacatttgtgaaaggnnnnnnnnnnnnnnnnnnntaacacatttgtaaaagaaatttttctcagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||| |
|
|
| T |
8998991 |
tataatttactccctcctctttacaataaattacacatttgtgaaagaaaaaaaaactaccaaaaaataacacatttgtaaaagaaaaaattgtcaaaaa |
8999090 |
T |
|
| Q |
201 |
atgaataatgatttttaatttttgatggaatattaacaacatatatatgtttaatagtaccctc |
264 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8999091 |
atgaataatgatttttaatttttaatggaatattaacaacatatatatgtttaatagtaccctc |
8999154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University