View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_3 (Length: 660)
Name: NF4035_low_3
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 133 - 645
Target Start/End: Original strand, 9410384 - 9410896
Alignment:
| Q |
133 |
gtattacatatatagctgcaactattgtatactgcaacatcccaaactacattccaaacatgaattgaatggtttctcctcacttcaaaatggcaatgtt |
232 |
Q |
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| T |
9410384 |
gtataacatatatagctgcaactattgtatactgcaacatcccaaactacattccaaacatgaattgaatggtttctcctcacttcaaaatggcaatgtt |
9410483 |
T |
|
| Q |
233 |
ttaagaatctaaccgtnnnnnnnnnnnnnnnnntcaatgagaagaatgtctgcatatctcaggaaagcattttacattgaattcatatcttcagaaaagc |
332 |
Q |
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| T |
9410484 |
ttaagaatctaaccgtaaaaaaattggaaaaaatcaatgagaagaatgtatgcatatctcagaaaagcattttacattgaattcatatcttcagaaaagc |
9410583 |
T |
|
| Q |
333 |
atgttctttgg-gaagattagtcatttattaatcaacggtgagaaaacttcgtaccaatattataataaaccnnnnnnnn--tatagactagacaaaaat |
429 |
Q |
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| T |
9410584 |
atgttccttggcgaagattagtcatttattaatcagcggtgagaaaacttcgtaccaatattataataaaccaaaaaaaaaatatagactagacaaaaat |
9410683 |
T |
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| Q |
430 |
atgtgattaccccaaattgtagtataaactatgtttgcatatatttttgggacttttcacagtcaactgtatgtgacaaaattcaacacct-caacttgg |
528 |
Q |
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| T |
9410684 |
acgtgattgcccgaaattgtagtataaactatgtttgcatatatttttgggacttttcacagtcaactgtatgtgac-aaattcaacacctccaacttgg |
9410782 |
T |
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| Q |
529 |
gaacttcaaagttcaatccaattaacttcactccttcaaagttcttccaatagataattttgaatccctcccctcatgtcaaaagattcataaacttcaa |
628 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9410783 |
gagcttcaaagttcaatccaattaacttcactccttcaaagttcttccaatag---attttgaatccctgccctcatgtcaaaagattcataaacttcaa |
9410879 |
T |
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| Q |
629 |
tttagttcatagaaaac |
645 |
Q |
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| T |
9410880 |
tttagttcatagaaaac |
9410896 |
T |
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