View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4035_low_31 (Length: 250)

Name: NF4035_low_31
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4035_low_31
NF4035_low_31
[»] chr2 (5 HSPs)
chr2 (1-230)||(14921162-14921394)
chr2 (20-163)||(20518423-20518569)
chr2 (3-104)||(25460732-25460837)
chr2 (20-79)||(24188839-24188897)
chr2 (170-219)||(21503417-21503466)
[»] chr4 (10 HSPs)
chr4 (20-162)||(29438252-29438399)
chr4 (20-136)||(19899921-19900041)
chr4 (1-81)||(20984837-20984920)
chr4 (20-71)||(1002061-1002112)
chr4 (30-163)||(17183764-17183900)
chr4 (14-63)||(1002175-1002224)
chr4 (169-230)||(13066837-13066898)
chr4 (168-230)||(19602950-19603012)
chr4 (121-163)||(22120609-22120651)
chr4 (20-76)||(19602604-19602660)
[»] chr5 (4 HSPs)
chr5 (20-116)||(18281399-18281496)
chr5 (20-111)||(22643134-22643226)
chr5 (168-216)||(20695942-20695989)
chr5 (168-220)||(24518207-24518259)
[»] chr8 (4 HSPs)
chr8 (20-111)||(13582804-13582896)
chr8 (1-111)||(18771742-18771855)
chr8 (53-163)||(18789728-18789842)
chr8 (20-111)||(11438227-11438319)
[»] chr3 (7 HSPs)
chr3 (24-89)||(26298564-26298629)
chr3 (20-116)||(28730811-28730908)
chr3 (20-87)||(8714182-8714249)
chr3 (20-87)||(9066069-9066136)
chr3 (20-143)||(4597881-4598005)
chr3 (190-232)||(13586026-13586068)
chr3 (20-76)||(19542330-19542386)
[»] scaffold0186 (1 HSPs)
scaffold0186 (20-111)||(32936-33027)
[»] chr1 (7 HSPs)
chr1 (16-162)||(21549472-21549626)
chr1 (168-231)||(25132653-25132716)
chr1 (20-162)||(25778537-25778683)
chr1 (20-86)||(25731134-25731200)
chr1 (121-163)||(52269605-52269647)
chr1 (27-89)||(52269680-52269742)
chr1 (38-79)||(14580978-14581019)
[»] chr7 (7 HSPs)
chr7 (53-163)||(10924741-10924855)
chr7 (20-79)||(21544117-21544176)
chr7 (22-79)||(9760933-9760990)
chr7 (20-111)||(22334498-22334589)
chr7 (171-216)||(6272135-6272180)
chr7 (169-230)||(22271073-22271134)
chr7 (90-162)||(9455286-9455361)
[»] scaffold0107 (1 HSPs)
scaffold0107 (168-232)||(32834-32898)
[»] scaffold0065 (1 HSPs)
scaffold0065 (18-62)||(13119-13163)
[»] chr6 (2 HSPs)
chr6 (171-233)||(13803962-13804024)
chr6 (167-232)||(22263583-22263648)
[»] scaffold0804 (1 HSPs)
scaffold0804 (38-79)||(695-736)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 14921394 - 14921162
Alignment:
Q  1 ccattcaaacaaggcagta---aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaacccacaattgt 97  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  14921394 ccattcaaacaaggcagtagtgaattgcttagtttctaatataattgaatttaactatgaatttatggctataactcatcttaaaggaacccacaattgt 14921295  T
Q  98 aaatggtttaattgtgggggattaataaacttccactgattcatcacgggattatattctactttcatcacgagttgaacgacaatctctgaggagacga 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  14921294 aaatggtttaattgtgggggattaataaacttccactgattcatcacgggattatgttctactttcatcacgagttgaacaacaatccctgaggagacga 14921195  T
Q  198 ttaactcactactttattattttgtacgatttg 230  Q
    |||||||| ||||||||||||||||||||||||    
T  14921194 ttaactcattactttattattttgtacgatttg 14921162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 20518569 - 20518423
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaac-ccacaattgtaaatggtttaattgtggggga 118  Q
    |||||||||||||||||||||||||||| ||| |||||||||| |||||||| || |||||| ||||| || ||||||||||||||| |||||  |||      
T  20518569 aattgcttagtttctaatataattgaatctaagtatgaatttagggctataactcgtcttaacggaactccgcaattgtaaatggttgaattgcagggat 20518470  T
Q  119 tt---aataaacttccactgattcatcacgggattatattctactttc 163  Q
     |   ||||||||||||||||||||||||||| |||| ||||||||||    
T  20518469 gttaaaataaacttccactgattcatcacggg-ttatgttctactttc 20518423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 25460732 - 25460837
Alignment:
Q  3 attcaaacaaggcagta---aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaacc-cacaattgta 98  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||  || |||||||||| |||||||| ||| ||||| |||||| || |||||||    
T  25460732 attcaaacaaggcagtagtgaattgcttagtttctaatataattgaatcaaagtatgaatttagggctataactcaacttaagggaacctcataattgta 25460831  T
Q  99 aatggt 104  Q
    ||||||    
T  25460832 aatggt 25460837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 24188839 - 24188897
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatctt 79  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||||| || |||||||    
T  24188839 aattgcttagtttctaatataattgaatctaagtatgaattta-ggctacaactcatctt 24188897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 21503466 - 21503417
Alignment:
Q  170 agttgaacgacaatctctgaggagacgattaactcactactttattattt 219  Q
    |||||||||||||||  || ||||||||| |||| |||||||||||||||    
T  21503466 agttgaacgacaatccatgtggagacgataaacttactactttattattt 21503417  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 29438252 - 29438399
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa-cccacaattgtaaatggtttaattgtgggg-g 117  Q
    ||||||||||||||||||||||| |||||||| |||||||||| || ||||| ||||||||| |||| ||||||||||||| ||||| ||||| ||||      
T  29438252 aattgcttagtttctaatataatcgaatttaaatatgaatttagggttataactcatcttaagggaaccccacaattgtaagtggttgaattgaggggat 29438351  T
Q  118 attaa---taaacttccactgattcatcacgggattatattctacttt 162  Q
     ||||    |||||||||||||||||||||||  |||| |||||||||    
T  29438352 gttaaaataaaacttccactgattcatcacggagttatgttctacttt 29438399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 19899921 - 19900041
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa-cccacaattgtaaatggtttaattgtggggga 118  Q
    ||||||||||||||||| ||| |||||| ||| || ||||||| |||||||| |||||| || |||| ||| ||||||||||||||| ||||| ||||      
T  19899921 aattgcttagtttctaaaatatttgaatataaatacgaatttaaggctataactcatctaaagggaaccccgcaattgtaaatggttgaattgcggggat 19900020  T
Q  119 tt---aataaacttccactga 136  Q
    ||   ||||||||||||||||    
T  19900021 tttaaaataaacttccactga 19900041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20984920 - 20984837
Alignment:
Q  1 ccattcaaacaaggcagta---aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaa 81  Q
    ||||| |||||||||||||   ||||||||||||||||| ||||||||| |||| ||||||||||  | ||||| |||||||||    
T  20984920 ccattgaaacaaggcagtagtgaattgcttagtttctaaaataattgaacttaagtatgaatttagagttataactcatcttaa 20984837  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 1002061 - 1002112
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataa 71  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||| ||||    
T  1002061 aattgcttagtttctaatataattgaaactaagtatgaatttatggccataa 1002112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 17183900 - 17183764
Alignment:
Q  30 tttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaacc-cacaattgtaaatggtttaattgtgggg--gattaat-aa 125  Q
    |||||||||||||||| | ||| |||||||| | || ||||| ||||||||| ||||||  |||||||| ||||||| ||||||||||  | | ||| ||    
T  17183900 tttctaatataattgactctaagtatgaattcagggatataactcatcttaagggaaccttacaattgt-aatggttgaattgtggggacgttaaataaa 17183802  T
Q  126 acttccactgattcatcacgggattatattctactttc 163  Q
    ||||||||| |||||||||  | |||| ||||||||||    
T  17183801 acttccactaattcatcacatgtttatgttctactttc 17183764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 1002175 - 1002224
Alignment:
Q  14 gcagtaaattgcttagtttctaatataattgaatttaactatgaatttat 63  Q
    ||||| ||||| |||||||||||||||||| ||||||| |||||||||||    
T  1002175 gcagtgaattgtttagtttctaatataattaaatttaagtatgaatttat 1002224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 13066837 - 13066898
Alignment:
Q  169 gagttgaacgacaatctctgaggagacgattaactcactactttattattttgtacgatttg 230  Q
    ||||||||||| ||||||||  ||||||||||||| |||||||||||| ||| ||| |||||    
T  13066837 gagttgaacgaaaatctctgttgagacgattaacttactactttattactttatacaatttg 13066898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 19602950 - 19603012
Alignment:
Q  168 cgagttgaacgacaatctctgaggagacgattaactcactactttattattttgtacgatttg 230  Q
    |||||||||||| |||| ||| |||||||||||||| ||| |||||||| || |||| |||||    
T  19602950 cgagttgaacgataatccctgtggagacgattaacttactgctttattacttggtactatttg 19603012  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 22120609 - 22120651
Alignment:
Q  121 aataaacttccactgattcatcacgggattatattctactttc 163  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||    
T  22120609 aataaacttccactgattcatcaggggattatgttctaatttc 22120651  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 19602604 - 19602660
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcat 76  Q
    ||||| ||| |||||||||||||||||| ||| ||||||| || |||||||| ||||    
T  19602604 aattggttaatttctaatataattgaatctaagtatgaatgtaaggctataactcat 19602660  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 18281496 - 18281399
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaac-ccacaattgtaaatggtttaattgtgggg 116  Q
    |||| ||||||||||||||||||||||| ||| |||||||||| || ||||| |||||||||  |||| || ||||||||||||||| ||||||||||    
T  18281496 aatttcttagtttctaatataattgaatctaagtatgaatttagggttataactcatcttaagagaactccgcaattgtaaatggttgaattgtgggg 18281399  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 22643226 - 22643134
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa-cccacaattgtaaatggtttaattg 111  Q
    ||||||||||||| |||| ||||||||||||| |||| ||||| || ||||| ||||||||| | || ||||||||||||| ||||| |||||    
T  22643226 aattgcttagtttttaatttaattgaatttaagtatggatttagggatataactcatcttaaggaaatcccacaattgtaattggttaaattg 22643134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 20695942 - 20695989
Alignment:
Q  168 cgagttgaacgacaatctctgaggagacgattaactcactactttatta 216  Q
    ||||||||||||||||| ||| |||||||| ||||| ||||||||||||    
T  20695942 cgagttgaacgacaatccctgtggagacga-taacttactactttatta 20695989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 24518207 - 24518259
Alignment:
Q  168 cgagttgaacgacaatctctgaggagacgattaactcactactttattatttt 220  Q
    ||||||||||||||||| ||  ||||||||| |||| ||||||||||| ||||    
T  24518207 cgagttgaacgacaatccctatggagacgataaacttactactttattttttt 24518259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 13582896 - 13582804
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa-cccacaattgtaaatggtttaattg 111  Q
    ||||||||||||||||| |||||||||| ||| |||||||||| |||||||| ||||||||   ||| |||| |||||||||||||| |||||    
T  13582896 aattgcttagtttctaaaataattgaatataagtatgaatttaaggctataactcatcttacgagaatcccataattgtaaatggttgaattg 13582804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 18771742 - 18771855
Alignment:
Q  1 ccattcaaacaaggcagta---aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa-cccacaattg 96  Q
    |||||||||||||| ||||   ||||||||||||||||||||||||||| ||   |||||||||| || ||||| |||| |||| |||| ||||||||||    
T  18771742 ccattcaaacaaggtagtagtgaattgcttagtttctaatataattgaactt-ggtatgaatttagggatataactcattttaagggaaccccacaattg 18771840  T
Q  97 taaatggtttaattg 111  Q
    ||||||||| |||||    
T  18771841 taaatggttcaattg 18771855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 18789728 - 18789842
Alignment:
Q  53 tatgaatttatggctataattcatcttaatggaaccc-acaattgtaaatggtttaattg-tgggggatt--aataaacttccactgattcatcacggga 148  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||||||||||| || |||||  |||  |||  |||||||||||||| |||||||||||      
T  18789728 tatgaatttagggctataactcatcttaagggaaccccacaattgtaaatgattgaattgcagggatattaaaataaacttccactaattcatcacggag 18789827  T
Q  149 ttatattctactttc 163  Q
    |||| || |||||||    
T  18789828 ttatgttatactttc 18789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 11438227 - 11438319
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa-cccacaattgtaaatggtttaattg 111  Q
    |||||||||||||||||  | ||| ||| ||| |||||||||| || | ||| ||||||||| |||| |||| |||||||||||||| |||||    
T  11438227 aattgcttagtttctaaattgattaaatataagtatgaatttagggttttaactcatcttaagggaaccccaaaattgtaaatggttgaattg 11438319  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 26298564 - 26298629
Alignment:
Q  24 gcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaaccc 89  Q
    |||||||||||||||||||||||| ||| |||||||||| || ||||| ||||||||| |||||||    
T  26298564 gcttagtttctaatataattgaatctaagtatgaatttagggatataactcatcttaagggaaccc 26298629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 28730908 - 28730811
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa-cccacaattgtaaatggtttaattgtgggg 116  Q
    ||||| |||||||||||  ||||||||| ||| |||||||||| || || || ||||||||| |||| |||||||||||||||| || ||||| ||||    
T  28730908 aattgtttagtttctaaattaattgaatctaagtatgaatttaaggttacaactcatcttaagggaaccccacaattgtaaatgattgaattgcgggg 28730811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 8714249 - 8714182
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaac 87  Q
    ||||| ||| ||||||||||||| |||| ||| |||||||||| |||||||| | |||||||||||||    
T  8714249 aattgtttaatttctaatataatagaatctaagtatgaatttagggctataactaatcttaatggaac 8714182  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 9066136 - 9066069
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaac 87  Q
    ||||| ||| ||||||||||||| |||| ||| |||||||||| |||||||| | |||||||||||||    
T  9066136 aattgtttaatttctaatataatagaatctaagtatgaatttagggctataactaatcttaatggaac 9066069  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 4598005 - 4597881
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaacccacaattgtaaatggtttaattgtgggggat 119  Q
    ||||| |||||||||||||   |||||| ||| |||||||||| |||||||| ||||||||| | |  |  ||||||||| || || ||||| ||||  |    
T  4598005 aattggttagtttctaataattttgaatctaagtatgaatttagggctataactcatcttaaagaacgctgcaattgtaagtgcttgaattgcggggatt 4597906  T
Q  120 taat-aaacttccactgattcatca 143  Q
     ||| ||||||||||||||||||||    
T  4597905 aaataaaacttccactgattcatca 4597881  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 13586068 - 13586026
Alignment:
Q  190 ggagacgattaactcactactttattattttgtacgatttggt 232  Q
    |||||||||||||| |||||||||||||||  |||||||||||    
T  13586068 ggagacgattaacttactactttattatttgatacgatttggt 13586026  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 19542386 - 19542330
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcat 76  Q
    |||||||||| ||||||||||| ||||| | | |||| |||||||||||||| ||||    
T  19542386 aattgcttagcttctaatataactgaatctgagtatggatttatggctataactcat 19542330  T

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Target: scaffold0186 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 33027 - 32936
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa-cccacaattgtaaatggtttaattg 111  Q
    ||||||||| |||||||||||||||||  ||| ||||| |||| |||||||| |||| |||| |||| ||||||||||||||||||| |||||    
T  33027 aattgcttaatttctaatataattgaa-ctaagtatgattttagggctataactcattttaagggaaccccacaattgtaaatggttgaattg 32936  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 21549472 - 21549626
Alignment:
Q  16 agtaaattgcttagtttctaatataattgaatttaactatgaatt----tatggctataattcatcttaatggaa-cccacaattgtaaatggtttaatt 110  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||||    || ||||| || ||||||||| |||| |||||||||| || || || ||||    
T  21549472 agtaaatttcttagtttctaatataattgaatctaagtatgaatttagctagggctacaactcatcttaagggaaccccacaattgcaagtgattgaatt 21549571  T
Q  111 gtgggg--gattaata-aacttccactgattcatcacgggattatattctacttt 162  Q
    ||||||  | | |||| |||||||||||||| ||||| || |||| || ||||||    
T  21549572 gtggggacgttaaatacaacttccactgattaatcacagggttatgttatacttt 21549626  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 25132716 - 25132653
Alignment:
Q  168 cgagttgaacgacaatctctgaggagacgattaactcactactttattattttgtacgatttgg 231  Q
    |||||||||||||||||  || ||||| |||||||| | || |||||||||| |||||||||||    
T  25132716 cgagttgaacgacaatccatgtggagatgattaacttattaatttattatttagtacgatttgg 25132653  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 25778537 - 25778683
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaaccca-caattgtaaatggtttaattgtggggg- 117  Q
    ||||||||  |||||||  ||||||||| ||| |||||||||| |||||||| ||||||||| |||| | | |||   ||||||||| |||||  |||      
T  25778537 aattgcttgatttctaaattaattgaatctaattatgaatttagggctataactcatcttaagggaatctaacaacaataaatggttgaattgcagggat 25778636  T
Q  118 -attaa-taaacttccactgattcatcacgggattatattctacttt 162  Q
     || || ||||||||||||| ||||||||||| |||| |||||||||    
T  25778637 aataaaataaacttccactggttcatcacggggttatgttctacttt 25778683  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 25731134 - 25731200
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaa 86  Q
    ||||||||||||| |||  ||||||||| ||| ||||||||||  ||||||| ||||||||| ||||    
T  25731134 aattgcttagtttttaaattaattgaatctaattatgaatttagagctataactcatcttaagggaa 25731200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 52269647 - 52269605
Alignment:
Q  121 aataaacttccactgattcatcacgggattatattctactttc 163  Q
    |||||||||||||||||||||||| ||||||| || |||||||    
T  52269647 aataaacttccactgattcatcacaggattatgttatactttc 52269605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 52269742 - 52269680
Alignment:
Q  27 tagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaaccc 89  Q
    |||||| |||||||||||||| ||| ||||||| || |||||||  ||||||||| |||||||    
T  52269742 tagtttttaatataattgaatctaagtatgaatatagggctatagctcatcttaagggaaccc 52269680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 14580978 - 14581019
Alignment:
Q  38 ataattgaatttaactatgaatttatggctataattcatctt 79  Q
    |||||||||| ||| ||||||||||||||||||| |||||||    
T  14580978 ataattgaatctaagtatgaatttatggctataactcatctt 14581019  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 10924741 - 10924855
Alignment:
Q  53 tatgaatttatggctataattcatcttaatggaaccc-acaattgtaaatggtttaattg-tgggggatt--aataaacttccactgattcatcacggga 148  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||||||||||| || |||||  |||  |||  |||||||||||||| |||||||||||      
T  10924741 tatgaatttagggctataactcatcttaagggaaccccacaattgtaaatgattgaattgcagggatattaaaataaacttccactaattcatcacggag 10924840  T
Q  149 ttatattctactttc 163  Q
    |||| || |||||||    
T  10924841 ttatgttatactttc 10924855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 21544176 - 21544117
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatctt 79  Q
    ||||||||||||| ||||| |||||||| ||||  ||||||||||||||||| |||||||    
T  21544176 aattgcttagtttataatacaattgaatctaaccttgaatttatggctataagtcatctt 21544117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 9760933 - 9760990
Alignment:
Q  22 ttgcttagtttctaatataattgaatttaactatgaatttatggctataattcatctt 79  Q
    |||||| ||||||||||||||||||| | | |||||||||| |||||||| |||||||    
T  9760933 ttgcttggtttctaatataattgaatcttagtatgaatttagggctataactcatctt 9760990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 22334589 - 22334498
Alignment:
Q  20 aattgcttagtttctaatataattgaatttaactatgaatttatggctataattcatcttaatggaacccacaattgtaaatggtttaattg 111  Q
    |||||||||||||| ||  ||||||||| ||| ||||||| || || ||||  ||||||||| |||||||  |||||||| ||||| |||||    
T  22334589 aattgcttagtttccaaattaattgaatctaattatgaatgtagggttatacctcatcttaagggaaccccaaattgtaactggttgaattg 22334498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 6272180 - 6272135
Alignment:
Q  171 gttgaacgacaatctctgaggagacgattaactcactactttatta 216  Q
    ||||||||| |||||||| | ||||||| |||||||||||||||||    
T  6272180 gttgaacgataatctctgtgtagacgataaactcactactttatta 6272135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 22271134 - 22271073
Alignment:
Q  169 gagttgaacgacaatctctgaggagacgattaactcactactttattattttgtacgatttg 230  Q
    |||||||||||||||| ||  | |||||||||||| ||||| |||||| |||| ||||||||    
T  22271134 gagttgaacgacaatccctatgaagacgattaacttactaccttattactttgcacgatttg 22271073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 9455361 - 9455286
Alignment:
Q  90 acaattgtaaatggtttaattgtgggg-gatt--aataaacttccactgattcatcacgggattatattctacttt 162  Q
    |||||||||||||||| ||||| ||||  |||  |||||||||||| |||||||||| ||| |||| |||||||||    
T  9455361 acaattgtaaatggttgaattgcggggatattagaataaacttccattgattcatcatggggttatgttctacttt 9455286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 32834 - 32898
Alignment:
Q  168 cgagttgaacgacaatctctgaggagacgattaactcactactttattattttgtacgatttggt 232  Q
    |||||||||||| ||||  || |||||| ||||||| |||||||||||| || ||||||||||||    
T  32834 cgagttgaacgataatccatgtggagacaattaactaactactttattacttggtacgatttggt 32898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 13119 - 13163
Alignment:
Q  18 taaattgcttagtttctaatataattgaatttaactatgaattta 62  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||||    
T  13119 taaatttcttagtttctaatataattgaatctaagtatgaattta 13163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 13803962 - 13804024
Alignment:
Q  171 gttgaacgacaatctctgaggagacgattaactcactactttattattttgtacgatttggtg 233  Q
    ||||||| |||||| ||  |||||||||||||| |||||||||||| ||  ||||||||||||    
T  13803962 gttgaactacaatccctatggagacgattaacttactactttattaattgttacgatttggtg 13804024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 22263583 - 22263648
Alignment:
Q  167 acgagttgaacgacaatctctgaggagacgattaactcactactttattattttgtacgatttggt 232  Q
    ||||||||||||||||| |||| |||||| || |||| |||||||||||  ||  |||||||||||    
T  22263583 acgagttgaacgacaatgtctgtggagacaataaacttactactttattgcttattacgatttggt 22263648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 695 - 736
Alignment:
Q  38 ataattgaatttaactatgaatttatggctataattcatctt 79  Q
    |||||||||| ||| ||||||||||||||||||| |||||||    
T  695 ataattgaatctaagtatgaatttatggctataactcatctt 736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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