View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_38 (Length: 241)
Name: NF4035_low_38
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 21377027 - 21376804
Alignment:
| Q |
1 |
ggaaccggattgttacaagtcagccaaaaaagaaatttatatttttcgggaagacaaaacttccaaatccaaatcgaagagtgaaggtgttggtttgatc |
100 |
Q |
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| T |
21377027 |
ggaaccggattgttacaagtcagccaaaaaagaaatttatatttttcgggaagacaaaacttccaaatccaaatcaaagagtgaaggtgttggtttgatc |
21376928 |
T |
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| Q |
101 |
aactctatcggaattattgagaagccagatgtaaccgctttttggagtatgaataccattcttttggttgttccatagaactggatcttcctcggtatca |
200 |
Q |
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| T |
21376927 |
aactctgtcggaattattgagaagccagatgtaaccgctttttggagtatgaataccattcttttggttgttccatagaactggatcttcctcggtatca |
21376828 |
T |
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| Q |
201 |
ttgaaattcatgtgagtgaggttt |
224 |
Q |
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| T |
21376827 |
ttgaaattcatgtgagtgaggttt |
21376804 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 25121974 - 25122032
Alignment:
| Q |
117 |
ttgagaagccagatgtaaccgctttttggagtatgaataccattcttttggttgttcca |
175 |
Q |
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| T |
25121974 |
ttgagaagccagttgtaaccacttttttgagaataagtgccattcttttggttgttcca |
25122032 |
T |
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