View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4035_low_39 (Length: 238)
Name: NF4035_low_39
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_39 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 19414805 - 19415025
Alignment:
| Q |
18 |
ctaagggtaatgaacacaatgttaaaatgatcaagagttactgccaaaaggttgaggaggaactctccaaaatctgtggtgacattctgacaattattga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19414805 |
ctaagggtaatgaacacaatgttaaaatgatcaagagttactgccaaaaggttgaggaggaactctccaaaatctgtggtgacattctgacaattattga |
19414904 |
T |
|
| Q |
118 |
ccagcatctggttcctgcttccacctcggcagaagctaatgttttctatcataagatgtgagtcatgtattgctacactgcttttgtactacttgattga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19414905 |
ccagcatctggttcctgcttccacctcggcagaagctaatgttttctatcataagatgtgagtcatatattgctacactgcttttgtactacttgattga |
19415004 |
T |
|
| Q |
218 |
ttgatttaaatcctttctgac |
238 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
19415005 |
ttgattcaaatcctttctgac |
19415025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 32313409 - 32313574
Alignment:
| Q |
18 |
ctaagggtaatgaacacaatgttaaaatgatcaagagttactgccaaaaggttgaggaggaactctccaaaatctgtggtgacattctgacaattattga |
117 |
Q |
| |
|
||||||| ||||| |||| || ||| |||||||||| || ||||||||||||||||||||||| || ||||| || | |||||||| ||||||||| |
|
|
| T |
32313409 |
ctaagggaaatgagaacaacgtgaaactgatcaagagctattgccaaaaggttgaggaggaactatcgaaaatttgcagcgacattctcgaaattattga |
32313508 |
T |
|
| Q |
118 |
ccagcatctggttcctgcttccacctcggcagaagctaatgttttctatcataagatgtgagtcat |
183 |
Q |
| |
|
| | |||||| ||||| |||||||| | | ||||||| ||||||||| | |||||||||||||| |
|
|
| T |
32313509 |
caaacatctgattccttcttccaccacaggggaagctactgttttctactacaagatgtgagtcat |
32313574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University