View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_40 (Length: 237)
Name: NF4035_low_40
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34720258 - 34720478
Alignment:
| Q |
1 |
tccatattactctaatccattaccccttgcaataattccatcgtattagcaatcaataaaaccaaaataaatagattatggtaacatgataaatgtaaca |
100 |
Q |
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| T |
34720258 |
tccatattactctaatcaattaccccttgcaataattccatcgtattagcaatcaataaagccaaaataaatagattatggtaacatgataaatgtaaca |
34720357 |
T |
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| Q |
101 |
atctaaacttggtacaatatcacgaggctcaattataaagtaagacgtgaaatgacctgcattgatactcttggtttcaaggactttggatgtaaaatgg |
200 |
Q |
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| T |
34720358 |
atctaaacttggtacaatatcacgaggctcaattataaagtaagacgtgaaatgacctgcattgatactcttggtttcaaggactttagatgtaaaatgg |
34720457 |
T |
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| Q |
201 |
acatcggaatcatcagatagc |
221 |
Q |
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| T |
34720458 |
acatcggaatcatcagatagc |
34720478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 38610298 - 38610368
Alignment:
| Q |
147 |
gtgaaatgacctgcattgatactcttggtttcaaggactttggatgtaaaatggacatcggaatcatcaga |
217 |
Q |
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| T |
38610298 |
gtgaaataacctggattgatactcttggttgcaaggactttggatgtaaaatggacattgaaatcaacaga |
38610368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 38795083 - 38795153
Alignment:
| Q |
147 |
gtgaaatgacctgcattgatactcttggtttcaaggactttggatgtaaaatggacatcggaatcatcaga |
217 |
Q |
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| T |
38795083 |
gtgaaataacctggattgatactcttggttgcaaggactttggatgtaaaatggacattgaaatcaacaga |
38795153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 34729700 - 34729772
Alignment:
| Q |
145 |
acgtgaaatgacctgcattgatactcttggtttcaaggactttggatgtaaaatggacatcggaatcatcaga |
217 |
Q |
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||||||||| |||| || ||||||||||||| |||| ||||||||||||||||||||| |||||||||||| |
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| T |
34729700 |
acgtgaaataacctcgatcgatactcttggttgcaagaactttggatgtaaaatggacaatggaatcatcaga |
34729772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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