View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_41 (Length: 236)
Name: NF4035_low_41
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 12171322 - 12171537
Alignment:
| Q |
9 |
gaggacaaggaacattttcttggggaaattagcatttcttacctct--ggcactccaataaatgtgagttcttgttttcactggtgattctttcctatga |
106 |
Q |
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| T |
12171322 |
gaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatga |
12171421 |
T |
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| Q |
107 |
tgtccatgtcaatattagcttgtgcnnnnnnnncaagtttgcaactgttccaccatatgttaatatgaagcttctagtcgttgcttcgcaa--tgaccac |
204 |
Q |
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|||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| |||||| ||||||| ||| | |||| |
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| T |
12171422 |
tgtccatgacaatattagcttgtgc-ttgttttcaagtttgcaaccgtttcaccatatgttaatatgaagctcctagtcattgcttcacaatctcgccac |
12171520 |
T |
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| Q |
205 |
acgttcaacatccaatt |
221 |
Q |
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||||||||| ||||||| |
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| T |
12171521 |
acgttcaacgtccaatt |
12171537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 12415750 - 12415965
Alignment:
| Q |
9 |
gaggacaaggaacattttcttggggaaattagcatttcttacctct--ggcactccaataaatgtgagttcttgttttcactggtgattctttcctatga |
106 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
12415750 |
gaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttattttcactggtgattatttcctatga |
12415849 |
T |
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| Q |
107 |
tgtccatgtcaatattagcttgtgcnnnnnnnncaagtttgcaactgttccaccatatgttaatatgaagcttctagtcgttgcttcgcaa--tgaccac |
204 |
Q |
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|||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| |||||| ||||||| ||| | |||| |
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| T |
12415850 |
tgtccatgacaatattagcttgtgc-ttgttttcaagtttgcaaccgtttcaccatatgttaatatgaagctcctagtcattgcttcacaatctcgccac |
12415948 |
T |
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| Q |
205 |
acgttcaacatccaatt |
221 |
Q |
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| T |
12415949 |
acgttcaacgtccaatt |
12415965 |
T |
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