View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_48 (Length: 209)
Name: NF4035_low_48
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 33166803 - 33166631
Alignment:
| Q |
16 |
cagaggaagataaaatcctcatccaatcatggctaaatatttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaat |
115 |
Q |
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| T |
33166803 |
cagaggaagataaactcctcatccaatcatggctaaatatttctaaggatgcagttgtacaggggtaaatcaaagagcaaatgttttttggcaaaagaat |
33166704 |
T |
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| Q |
116 |
tgcagatggttataatgaacattgtggtcatttctttgcaaagggcccagtacaactaaaatctcgatggtcg |
188 |
Q |
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| T |
33166703 |
tgcagatggttataatgaacattgtggttatttccttgcaaagggaccagtacaactaaaatctcgatggtcg |
33166631 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 49281391 - 49281300
Alignment:
| Q |
43 |
catggctaaatatttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacat |
137 |
Q |
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| T |
49281391 |
catggctaaatatttctacggatgcatttgta--ggggtaattcaaagagcaaatgctctttagc-aaataattacaaatggttataatgaacat |
49281300 |
T |
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