View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_49 (Length: 204)
Name: NF4035_low_49
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 40372857 - 40373029
Alignment:
| Q |
14 |
aatactcagcaattccataaaaataaacactatgcaagccaaaaatgctaattgctaaagtgacagaccacacaaagcagcaacgcaccaaaactaaggg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40372857 |
aatactcagcaattccataaaaataaacactatgcaagccaaaaatgctaattgctaaagtgacagaccacacaaagcagcaacacaccaaaactaaggg |
40372956 |
T |
|
| Q |
114 |
gatgagattgaaagttgagagtgaggatgagaagagggcaagagacacgcaagactcaggagaaagggaaaag |
186 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
40372957 |
gatgagattgaaagttgagagtgaggatgagaagaggacaagagacgcgcaagactcaggagaaagggaaaag |
40373029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 2081634 - 2081568
Alignment:
| Q |
14 |
aatactcagcaattccataaaaataaacactatgcaagccaaaaatgctaattgctaaagtgacaga |
80 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2081634 |
aatactcggcaattccataaaaataaacactatgcaagccaaaaatgcttactgctaaagtgacaga |
2081568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 42528753 - 42528810
Alignment:
| Q |
14 |
aatactcagcaattccataaaaataaacactatgcaagccaaaaatgctaattgctaa |
71 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
42528753 |
aatactcggcaattccataaaaataaacactatgcaatccaaaaatgtttattgctaa |
42528810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 18075927 - 18076102
Alignment:
| Q |
14 |
aatactcagcaattccataaaaataaacactatgcaagccaaaaa---tgctaattgctaaagtgacagaccacacaaa-gcagcaacgcaccaaaacta |
109 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||| | || |||||||| |
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| T |
18075927 |
aatactcaacaattccataaaaataaacactatgcaagccaaaaaaattgcttaccgctaaagtgacagaccacacaaaagcagcagcacatcaaaacta |
18076026 |
T |
|
| Q |
110 |
aggggatgagattgaaagttgagagtgaggatgagaagagggcaagagacacgcaagactcaggagaaagggaaaa |
185 |
Q |
| |
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|||||| |||||||||||||||||| |||||||| ||||||||||||| | |||| ||||| || |||||||||| |
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| T |
18076027 |
aggggacgagattgaaagttgagagagaggatgacaagagggcaagaggcgcgcaggactccgggaaaagggaaaa |
18076102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 33003210 - 33003040
Alignment:
| Q |
14 |
aatactcagcaattccataaaaataaacactatgcaagccaaaaatgctaattgctaaagtgacagaccacaca-aagcagcaacgcaccaaaa-ctaag |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| |||||||| | ||||||||| ||| |||||| | ||||| || | |||||||| ||||| |
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| T |
33003210 |
aatactcggcaattccataaaaataaacaccatgcaa----aaaatgcttactgctaaagtaacataccacatagaagcaacatcacaccaaaaactaag |
33003115 |
T |
|
| Q |
112 |
gggatgagattgaaagttgagagtgaggatgagaagagggcaagagacacgcaagactcaggagaaagggaaaag |
186 |
Q |
| |
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| ||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||| | |||||||||||| |
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| T |
33003114 |
gagatgagattgaaagttgagagagaggatgagaggagggcaagaggcacgcatgactcaagggaaagggaaaag |
33003040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 48089366 - 48089534
Alignment:
| Q |
13 |
taatactcagcaattccataaaaataaacactatgcaagccaaaaatgctaattgctaaagtgacagaccacacaaagcagcaacgcaccaaaactaagg |
112 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||| |||||||| || | |||||||||||| | | || ||||| | |||||||||||||| |
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| T |
48089366 |
taatacttagcaatttcataaaaataaacactatgcacaccaaaaatacttaccgctaaagtgaca----atagaa-gcagctgcacaccaaaactaagg |
48089460 |
T |
|
| Q |
113 |
ggatgagattgaaagttgagagtgaggatgagaagagggcaagagacacgcaagactcaggagaaagggaaaag |
186 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||||||||| | || |||||||| |||||||||||| |
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| T |
48089461 |
ggatgagattgaaagttgagagagaggataagaagagggcaagaggtgcacatgactcaggggaaagggaaaag |
48089534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 24658113 - 24658210
Alignment:
| Q |
14 |
aatactcagcaattccataaaaataaacactatgcaagccaaaaatgctaattgctaaagtgacagaccacaca-aagcagcaacgcaccaaaactaa |
110 |
Q |
| |
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|||||||| |||||| ||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||| |||||||| | |||||||||||| |
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| T |
24658113 |
aatactcaacaattctataaaaataaacattatgcaagccaaaaatgcttactgccaaagtgacagaccacacagaagcagcagcacaccaaaactaa |
24658210 |
T |
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