View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_5 (Length: 597)
Name: NF4035_low_5
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 7723498 - 7724083
Alignment:
| Q |
1 |
tgcaagtaccaataataacaacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggc |
100 |
Q |
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| T |
7723498 |
tgcaagtaccaataataacaacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggc |
7723597 |
T |
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| Q |
101 |
ccaaaggtnnnnnnnntactctaaatatatacattccaaatatataactttatttcaatcttttgatagtttcaatttgaatgggaattacagtcactat |
200 |
Q |
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| T |
7723598 |
ccaaaggtaaaaaaaatactctaaatata-atataacta-tatataactttatttcaatcttttgatagtttcaatttgaatgg-aattacagtcattat |
7723694 |
T |
|
| Q |
201 |
gcaatgcatgtgggatcagattcaagaaggaagagagaagagcaacttctgccgccggcacagcgacagcgccatctattggcgtaatggagtcagcttc |
300 |
Q |
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| T |
7723695 |
gcaatgcatgtgggatcagattcaagaaggaagagagaagagcaacttctgccgctggcacagcgacagcgccatctattggcgtaatggagtcagcttc |
7723794 |
T |
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| Q |
301 |
gatgtataaccaccaccaccatcacaa---caacaacaactcatggtacgtacaaccacagaaccagaagatgcagtgtttctctccagcaatgactaac |
397 |
Q |
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| T |
7723795 |
gatgtataaccaccaccaccatcacaacaacaacaacaactcatggtacgtacaaccacagaaccagaagatgcagtgtttctctccggcaattactaac |
7723894 |
T |
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| Q |
398 |
gagttccgtttcattgatgaaaccaatcatgattctgaaaatggcattccatttctctcttggagactctgatagaacaagcctcgttcatgaaaaatat |
497 |
Q |
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| T |
7723895 |
gagttccgtttcattgatgaaaccaatcatgattctgaaaatggcattccatttctctcttggagactctgatagaacaagcctcgttcatgaaaaatat |
7723994 |
T |
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| Q |
498 |
taataataatgttaaaatagtaatagatttagtaaagcagctaggacggtcaagaccaatgataatgatatgtagaagatgtttttgat |
586 |
Q |
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| T |
7723995 |
taataataatgttataatagtaatagatttagtaaagcagctaggacggtcaagaccaatgataatgatatgtagaagatgtttttgat |
7724083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 32956086 - 32956020
Alignment:
| Q |
177 |
ttgaatgggaattacagtcactatgcaatgcatgtgggatcagattcaagaaggaagagagaagagc |
243 |
Q |
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| T |
32956086 |
ttgaattgaaattgcagtcactatgcaatgcttgtgggattagatacaagaaggaagagagaagagc |
32956020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 32956410 - 32956322
Alignment:
| Q |
20 |
aacaatgattctcttcttgctcgtagatgtgcaaactgtgacaccacctccacaccgctttggaggaacggccctcgaggcccaaaggt |
108 |
Q |
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| T |
32956410 |
aacaatgattctcttcttgctcgtcgttgtgctagctgtgactccacttctacacccctttggaggaatggtcctcgtggccctaaggt |
32956322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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