View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4035_low_7 (Length: 452)
Name: NF4035_low_7
Description: NF4035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4035_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 426
Target Start/End: Original strand, 31596146 - 31596556
Alignment:
| Q |
9 |
agcagagaagacaaatagcctccaaaaatcttatacatgccactattgtttgtaggctttgatgaagagcaaattttggatgnnnnnnngggtaaaagca |
108 |
Q |
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| T |
31596146 |
agcaaagaagacaaatagcctccaaaaatcttatacatgccactattgt----aggctttgatgaagagcaaattttggatgtttttg-gggtaaaagca |
31596240 |
T |
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| Q |
109 |
atgttgaacaacaaattcatgttgattttgatagggaaaacagaaaagaaataccgcaggctttggacaaatgcacaacctatagaaacatataactact |
208 |
Q |
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| T |
31596241 |
atgttgaacaacaaattcatgttgattttgatagggaaaacagaaaagaaagaccgcaggctttggacaaatgcacaatctatagaaacatataactact |
31596340 |
T |
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| Q |
209 |
ttgttc--ctaacagagaagaaagactctagtctttggacaatgcacaacctgttgaaacatataactttgaatctatgttatatattgtcatttctaaa |
306 |
Q |
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| T |
31596341 |
ttgttcctctaacagagaagaaaaactctagtctttggacaatgcacaacctgttgaaacatat-actttgaatctatgt----tattgtcatttctaaa |
31596435 |
T |
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| Q |
307 |
gtgacactcaatcaatataagttttattttcgatgactctt-caatttatctagaacaagctcacataagaatacgttgaaaatacacttactttttatg |
405 |
Q |
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| T |
31596436 |
gtgacactcaatcaatataagttttattttcgatgactcttccaatttatctagaacaagctcacataagaatacgttgaaaatacacttactttttatg |
31596535 |
T |
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| Q |
406 |
agattagcacaactatttcac |
426 |
Q |
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| T |
31596536 |
agattagcacaactatttcac |
31596556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 31609345 - 31609536
Alignment:
| Q |
9 |
agcagagaagacaaatagcctccaaaaatcttatacatgccactattgtttgtaggctttgatgaagagcaaattttggatgnnnnnnngggtaaaagca |
108 |
Q |
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| T |
31609345 |
agcaaagaagagaaatagcttccaagaatcttctatatgccactattatt-gtaggctttgatgaagaacaaaatttggacgtttttg-gggtaaaagca |
31609442 |
T |
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| Q |
109 |
atgttgaacaacaaattcatgttgattttgatagggaaaacagaaaagaaataccgcaggctttggacaaatgcac-aacctatagaaacatata |
202 |
Q |
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| T |
31609443 |
atgttgaacaacacattcatgttggttttgataggaaaaacagaaaagaaagactgcagcctttggac-aatgcacaaacctatagaaacatata |
31609536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 31615735 - 31615829
Alignment:
| Q |
108 |
aatgttgaacaacaaattcatgttgattttgatagggaaaacagaaaagaaataccgcaggctttggacaaatgcacaacctatag-aaacatat |
201 |
Q |
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| T |
31615735 |
aatgttgaactatacattcatgttgattttgatggggaaaacagagaagaaagactgcggcctttgaaaaaatgcacaacctatagcaaacatat |
31615829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 31605854 - 31605946
Alignment:
| Q |
102 |
aaaagcaatgttgaacaacaaattcatgttgattttgat-agggaaaacagaaaagaaataccgcaggctttggacaaatgcacaacctatag |
193 |
Q |
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| T |
31605854 |
aaaaacaattttgaacaacacactcatgttgattttgatgggggaaaacggagaaaaaagactgcagccgttggaaaaatgcacaacctatag |
31605946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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