View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4036_high_1 (Length: 640)
Name: NF4036_high_1
Description: NF4036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4036_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 524; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 22 - 624
Target Start/End: Original strand, 6037059 - 6037661
Alignment:
| Q |
22 |
atcttctgctacttcatcatcgaattcgatgccaatactcgattccagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037059 |
atcttctgctacttcatcatcgaattcgatgccaatactcgattcgagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccag |
6037158 |
T |
|
| Q |
122 |
aagcttcccaccattgatattcttattcgcactcccagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatgt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037159 |
aagcttcccaccattgatattcttattcgcactcccagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatgt |
6037258 |
T |
|
| Q |
222 |
ttgatcttggccacatcaggtattttgagcgtttatttcatcgcgccattgattacagctgcggccaaataatccatatcaacatcaactatttttgtac |
321 |
Q |
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||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037259 |
ttgatcttggctacatcaggtatttagagtgtttatgtcatcgcgccattgattacagctgcggccaaataatccatatcaacatcaactatttttgtac |
6037358 |
T |
|
| Q |
322 |
caatgatcttctccgccacatcgctgataagtatgttccactttcttctgctctttcgtttgatatttcacaaatgtgtgtgtttcattgataatgtaaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037359 |
caatgatcttctccgccacatcgctgataagtatgttccactttcttctgctctttcgtttgatatttcacaaatgtgtgtgtttcattgataatgtaaa |
6037458 |
T |
|
| Q |
422 |
accacttataatttcctcaaaacgatttataactttggatggagggagtatactctagagactgaatatccaaaagtgannnnnnnnnnnnnnnnngttt |
521 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
6037459 |
accacttataatttcctcaaaactatttataactttggatggagggagtatactctagagactgaatatccaagagtgattttttattatttttttgttt |
6037558 |
T |
|
| Q |
522 |
gagtgtgatactttattaaaagccaagtttagttttcataaattttgtcacttgtctgggaaaattcatttatctcttaatgttaaaagccaagttttca |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037559 |
gagtgtgatactttattaaaagccaagtttagttttcataaattttgtcacttgtctgggaaaattcatttatctcttaatgttaaaagccaagttttca |
6037658 |
T |
|
| Q |
622 |
tat |
624 |
Q |
| |
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||| |
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| T |
6037659 |
tat |
6037661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 41 - 213
Target Start/End: Original strand, 6052069 - 6052241
Alignment:
| Q |
41 |
tcgaattcgatgccaatactcgattccagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgata |
140 |
Q |
| |
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|||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | || ||| |
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| T |
6052069 |
tcgaattcgaaatcaataatcgattctggagaacgaaactggctggatcttccacgagatgcagtcttatccattttccggaagctcgacgcaatcgatc |
6052168 |
T |
|
| Q |
141 |
ttcttattcgcactcccagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccat |
213 |
Q |
| |
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|||| ||||| ||| || |||||||| || |||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
6052169 |
ttctcgttcgcgctcacaatgtttgcaccacatggcgcaaaatctccaaagacccttttctctttcgcaccat |
6052241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 6045386 - 6045565
Alignment:
| Q |
41 |
tcgaattcgatgccaatactcgattccagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgata |
140 |
Q |
| |
|
|||||||||| |||||| ||||||| |||| ||||||||| ||||||||||| ||||| || ||| ||||||||| ||| |||| ||| || ||| |
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| T |
6045386 |
tcgaattcgaaaccaataatcgattctggagagcgaaactggttggatcttccatcagatgtcgtattaaccattttccggaaacttcacacgatcgatc |
6045485 |
T |
|
| Q |
141 |
ttcttattcgcactcccagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatg |
220 |
Q |
| |
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|||| |||| ||| | |||||||| || |||||||||||||| || || ||||||||||||| |||||||||||| |
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| T |
6045486 |
ttctccatcgcgctcataacgtttgcaccacatggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatg |
6045565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 6133806 - 6133655
Alignment:
| Q |
69 |
gagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgatattcttattcgcactcccagggtttgcac |
168 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||| ||||||||||||| ||||||| | | || |||||||| |||||| || || |||||||| |
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| T |
6133806 |
gagaacgaaactgggtagatcttccacgagattcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcac |
6133707 |
T |
|
| Q |
169 |
tacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatg |
220 |
Q |
| |
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| |||||| ||||||| || |||| || ||||||||| || ||| ||||| |
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| T |
6133706 |
catatggcgcgaaatctcaaaggaccattccctctatcgcactatcaacatg |
6133655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 6045620 - 6045725
Alignment:
| Q |
263 |
cgcgccattgattacagctgcggccaaataatccatatcaacatcaactatttttgtaccaatgatcttctccgccacatcgctgataagtatgttccac |
362 |
Q |
| |
|
|||||| |||||||||||| ||||||| || | ||||||| ||| | |||||| ||||| ||||||||||||| || ||||||||| ||| ||||||| |
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| T |
6045620 |
cgcgccgttgattacagctccggccaagcaaccgatatcaatatcgagtattttggtaccgatgatcttctccgtcatatcgctgattcgtaagttccac |
6045719 |
T |
|
| Q |
363 |
tttctt |
368 |
Q |
| |
|
|||||| |
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| T |
6045720 |
tttctt |
6045725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 6040771 - 6040934
Alignment:
| Q |
57 |
tactcgattccagagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgatattcttattcgcactcc |
156 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||| ||||| || ||| |||||||| |||||||| || ||||||| ||| ||| ||| |
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| T |
6040771 |
tactcaattccggagaacgaaattggctggatcttccaaaagatgtggtattaaccattttcgagaagcttggaacaattgatacccttcatcgtgctca |
6040870 |
T |
|
| Q |
157 |
cagggtttgcactacgtggcgcaaaatctccaaagaccctttcctctatcgtaccatcgacatg |
220 |
Q |
| |
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| |||||||| || |||||||||||||| || || ||||||||||||| |||||||||||| |
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|
| T |
6040871 |
taatgtttgcaccacatggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatg |
6040934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 6052307 - 6052372
Alignment:
| Q |
270 |
ttgattacagctgcggccaaataatccatatcaacatcaactatttttgtaccaatgatcttctcc |
335 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||| | |||||| |||| |||||||||||| |
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| T |
6052307 |
ttgattacagctgcggccacataattgatatcaacatcgagtattttggtactgatgatcttctcc |
6052372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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