View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4036_high_3 (Length: 256)
Name: NF4036_high_3
Description: NF4036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4036_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 37593731 - 37593530
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593731 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
37593632 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593631 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtt |
37593532 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
37593531 |
tg |
37593530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 37696122 - 37695921
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696122 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
37696023 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696022 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtt |
37695923 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
37695922 |
tg |
37695921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 37532627 - 37532426
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532627 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
37532528 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532527 |
atttttgatgtttctaacaacaattttagtgggcccttgccaatatcatgcatcaagaactttaaaggaatgatgaatgtgaatgacagccaaattggtt |
37532428 |
T |
|
| Q |
201 |
tg |
202 |
Q |
| |
|
|| |
|
|
| T |
37532427 |
tg |
37532426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 37393510 - 37393759
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37393510 |
agaaactctacaagagttacaggtgctaagtttacgatcaaatcatcttcatgggtcaatcacatgttctagcaccaagcatccatttcctaagttgaga |
37393609 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtt |
200 |
Q |
| |
|
|||| |||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
37393610 |
atttatgatgtctctagtaacaattttagtggccccttgccaacatcatgcttcaagaactttcaaggaatgatggatgtgaataacagccaaattggtt |
37393709 |
T |
|
| Q |
201 |
tgaaattcatgggtagagccagttactataattattataatgattctgtg |
250 |
Q |
| |
|
|| ||| |||||||| |||||| |||| |||||| ||||||||||||||| |
|
|
| T |
37393710 |
tgcaatacatgggtaaagccagatactttaattactataatgattctgtg |
37393759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 37823431 - 37823218
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37823431 |
agaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgaga |
37823332 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtt |
200 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37823331 |
atttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgagtgacgaccaaattggtt |
37823232 |
T |
|
| Q |
201 |
tgaaattcatgggt |
214 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
37823231 |
tgcaatacatgggt |
37823218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 37401631 - 37401818
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37401631 |
agaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgaga |
37401730 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgaca |
188 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401731 |
atttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgaca |
37401818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 37639273 - 37639086
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37639273 |
agaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgaga |
37639174 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgaca |
188 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639173 |
atttttgatgtctctaacaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgaca |
37639086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 37711031 - 37710844
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
37711031 |
agaaactctaccagagttacaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgaga |
37710932 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgaca |
188 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37710931 |
atttttgatgtctctaacaacaattttagtgggcccttgccagcatcatgcatcaagaactttcaaggaatgatgaaggtgaatgaca |
37710844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 37702210 - 37702023
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
||||||| ||| ||||||||| || || || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37702210 |
agaaactttaccagagttacaggtgctgagtttacgatcaaatcatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
37702111 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgaca |
188 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
37702110 |
atttttgatgcctctaacaacaattttagtggccccttgccaacatcatgcatcaagaactttcaaggaatgattaatgtaaatgaca |
37702023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 37382960 - 37383146
Alignment:
| Q |
2 |
gaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaa |
101 |
Q |
| |
|
|||||||||||||| ||||| || || || ||| |||||||||| |||||||| |||||||| || ||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
37382960 |
gaaactctacaagaattacaggtgctcagtttaagatcaaataaacttcatggcgcaatcacatgctctagcaccaaacatccatttcccaagttgagaa |
37383059 |
T |
|
| Q |
102 |
tttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgaca |
188 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37383060 |
tttttgatgtctctaacaacaattttattgggcccttgccaacatcgtgcatcaagaattttcaaggaatgatgaatgtgaatgaca |
37383146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 37435237 - 37435023
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
||||||||||||||||||||| || || || ||| |||||||||| ||| ||||| ||||||| ||||||| |||||| ||| | ||| ||||||| ||| |
|
|
| T |
37435237 |
agaaactctacaagagttacaggtactcagtttaagatcaaataaacttaatggttcaatcacctgttctaacaccaaccatcctttttctaagttaaga |
37435138 |
T |
|
| Q |
101 |
atttttgatgt-ttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggt |
199 |
Q |
| |
|
|||||||| | ||| | |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
37435137 |
atttttgacatcttcggt-aacaattttagtggatccttgccaacatcatgtatcaagaactttcaaggaatgatgaatgtgaatgatagccagattggt |
37435039 |
T |
|
| Q |
200 |
ttgaaattcatgggta |
215 |
Q |
| |
|
||| ||| |||||||| |
|
|
| T |
37435038 |
ttgcaatacatgggta |
37435023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 37413798 - 37413910
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
37413798 |
agaaactctacaagagttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacaaagcatacatttcccaagttgaga |
37413897 |
T |
|
| Q |
101 |
atttttgatgttt |
113 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
37413898 |
atattttatgttt |
37413910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 37428543 - 37428348
Alignment:
| Q |
36 |
gatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcc |
135 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||| ||||| ||| |||| || |||||||||||||| || | | || || | ||||||||| || |
|
|
| T |
37428543 |
gatcaaataaactgcatggtacaatcacttgttctatgaccaaacatccattccc-aagttgagaattttcgacatctataataaaatttttagtggtcc |
37428445 |
T |
|
| Q |
136 |
cttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgaaattcatgggtagagccagttactataat |
232 |
Q |
| |
|
|||||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| | | |||||||| |||| |||||||||| |
|
|
| T |
37428444 |
cttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactataat |
37428348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 26437767 - 26437679
Alignment:
| Q |
84 |
catttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatg |
172 |
Q |
| |
|
|||||||||||||||| |||||||||| || | ||| ||||||||||| | ||||| ||| | | |||||| |||||| |||||||| |
|
|
| T |
26437767 |
catttcctaagttgagggtttttgatgtctccaacaataattttagtggctctttgcccacaacgtacatcaaaaactttaaaggaatg |
26437679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 26451136 - 26451048
Alignment:
| Q |
84 |
catttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatg |
172 |
Q |
| |
|
|||||||||||||||| |||||||||| || | ||| ||||||||||| | ||||| ||| | | |||||| |||||| |||||||| |
|
|
| T |
26451136 |
catttcctaagttgagggtttttgatgtctccaacaataattttagtggctctttgcccacaacgtacatcaaaaactttaaaggaatg |
26451048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 14552899 - 14552650
Alignment:
| Q |
1 |
agaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| ||||||| || |||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14552899 |
agaaactctacaagagttacaagtgctaagtttacgatcaaatcatcttcacggagcaatcacctgttctagcatcaagcattcatttcctaagttgaga |
14552800 |
T |
|
| Q |
101 |
atttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtt |
200 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14552799 |
atttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatcaagaactttcaaggaatgatgaacgtgaatgacagccaaattggtt |
14552700 |
T |
|
| Q |
201 |
tgaaattcatgggtagagccagttactataattattataatgattctgtg |
250 |
Q |
| |
|
|| ||| |||||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14552699 |
tgcaatacatgggtaaagccagctactataattactataatgattctgtg |
14552650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 16843630 - 16843841
Alignment:
| Q |
2 |
gaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaa |
101 |
Q |
| |
|
|||||||||||||||||||| || || |||||||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16843630 |
gaaactctacaagagttacaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaa |
16843729 |
T |
|
| Q |
102 |
tttttgatgtttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggttt |
201 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
16843730 |
tttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggttt |
16843829 |
T |
|
| Q |
202 |
gaaattcatggg |
213 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
16843830 |
gcaatacatggg |
16843841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 24218374 - 24218548
Alignment:
| Q |
11 |
caagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatg |
110 |
Q |
| |
|
||||||||||| || || || |||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||| ||| ||||||||| |||| |
|
|
| T |
24218374 |
caagagttacaggtactcagtttacgatcaaatcatcttcatggtggaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatg |
24218473 |
T |
|
| Q |
111 |
tttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatg |
185 |
Q |
| |
|
| ||| || ||||| |||| ||| |||||||||| ||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
24218474 |
tctctggtaataatttccgtggccccgtgccaacatcttgcctcaagaattttcaaggaatgattaatgtgaatg |
24218548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 16846298 - 16846481
Alignment:
| Q |
2 |
gaaactctacaagagttacaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaa |
101 |
Q |
| |
|
|||||||||||||||||||| || || || ||| | |||||||| ||| ||||| ||||||| |||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
16846298 |
gaaactctacaagagttacatgtactcagtttaaggtcaaataaactttatggttcaatcacatgttctagcaccaagcatccatttcc-aaattgagaa |
16846396 |
T |
|
| Q |
102 |
tttttgatgt-ttctatcaacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatga |
186 |
Q |
| |
|
|||| || | ||| || ||||| || ||||| || |||||||||||||| |||||||| ||||||||||||||||| | |||||| |
|
|
| T |
16846397 |
ttttggacatcttcgat-aacaaattcagtggaccgttgccaacatcatgtatcaagaattttcaaggaatgatgaacgcgaatga |
16846481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University