View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4036_low_2 (Length: 423)
Name: NF4036_low_2
Description: NF4036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4036_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 35344464 - 35344325
Alignment:
| Q |
13 |
aatatcaaggtaccagatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35344464 |
aatatcaaggtaccagatgacgatgaacacggaacaatagctgctacattagacaaacaattcttcacggaagtcacgcttttatctcgcctccaccatc |
35344365 |
T |
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| Q |
113 |
caaatgttcttaaggtaattagattcaactgtttctcttc |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35344364 |
caaatgttcttaaggtaattagattcaactgtttctcttc |
35344325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 35361492 - 35361631
Alignment:
| Q |
13 |
aatatcaaggtaccagatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35361492 |
aatatcaaggtaccagatgacgatgaacacggaacaatagctgctacattagacaaacaattcttcacggaagtcacgcttttatctcgcctccaccatc |
35361591 |
T |
|
| Q |
113 |
caaatgttcttaaggtaattagattcaactgtttctcttc |
152 |
Q |
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| T |
35361592 |
caaatgttcttaaggtaattagattcaactgtttctcttc |
35361631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 180 - 356
Target Start/End: Complemental strand, 35344300 - 35344129
Alignment:
| Q |
180 |
atggaatataaatatataaggaaagttaggtaaaccatacagaaaattagggatactattttctacatcctaatttgttgtatactttggtctaattata |
279 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |||||||||||||| |
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| T |
35344300 |
atggaatataaatatataagaaaagttaggtaaaccatacagaaaattagggatactattttctacatccta-----tgggaaa--ttggtctaattata |
35344208 |
T |
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| Q |
280 |
ttatgcagttcatacatacttcacatcatgta--gagaaatttattattacaaggaaggtgttttatacatgatttctc |
356 |
Q |
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| T |
35344207 |
ttatgcacttcatacatacttcacatcatgtatagagaaatttagtattacaaggaaggtgttttatacatgatttctc |
35344129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 180 - 356
Target Start/End: Original strand, 35361656 - 35361827
Alignment:
| Q |
180 |
atggaatataaatatataaggaaagttaggtaaaccatacagaaaattagggatactattttctacatcctaatttgttgtatactttggtctaattata |
279 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |||||||||||||| |
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| T |
35361656 |
atggaatataaatatataagtaaagttaggtaaaccatacagaaaattagggatactattttctacatccta-----tgggaaa--ttggtctaattata |
35361748 |
T |
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| Q |
280 |
ttatgcagttcatacatacttcacatcatgta--gagaaatttattattacaaggaaggtgttttatacatgatttctc |
356 |
Q |
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| T |
35361749 |
ttatgcacttcatacatacttcacatcatgtatagagaaatttagtattacaaggaaggtgttttatacatgatttctc |
35361827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 35354648 - 35354763
Alignment:
| Q |
16 |
atcaaggtaccagatgacgatgaacacggaacaatatctgctacattagagaaacaattcttcacggaagtcacgcttttatctcgcctccaccatccaa |
115 |
Q |
| |
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|||| |||||| ||||| || ||| |||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| || |
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| T |
35354648 |
atcagggtaccggatgatgacgaaaacggaacaatggctgctacattagagaaacaattcatcacagaagtcacacttttatctcgcctccaccatcaaa |
35354747 |
T |
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| Q |
116 |
atgttcttaaggtaat |
131 |
Q |
| |
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|||||||||||||||| |
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| T |
35354748 |
atgttcttaaggtaat |
35354763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 35358026 - 35358088
Alignment:
| Q |
294 |
catacttcacatcatgtagagaaatttattattacaaggaaggtgttttatacatgatttctc |
356 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |||||||||||||| | |||||||| |
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| T |
35358026 |
catacttcacatcatgtagggaaatttactattacaaagaaggtgttttataaacgatttctc |
35358088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 35344114 - 35344081
Alignment:
| Q |
373 |
tgatctgattgtgcagttggtagcagcatgcaga |
406 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35344114 |
tgatctgattgtgcagttggtagcagcatgcaga |
35344081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 35361842 - 35361875
Alignment:
| Q |
373 |
tgatctgattgtgcagttggtagcagcatgcaga |
406 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
35361842 |
tgatctgattgtgcagttggtagcagcatgcaga |
35361875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 35355123 - 35355185
Alignment:
| Q |
294 |
catacttcacatcatgtagagaaatttattattacaaggaaggtgttttatacatgatttctc |
356 |
Q |
| |
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|||| |||||||||||| ||||||| || ||| |||||||| || |||||||||| ||||||| |
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| T |
35355123 |
catatttcacatcatgttgagaaatctactataacaaggaatgtattttatacataatttctc |
35355185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 35355194 - 35355227
Alignment:
| Q |
373 |
tgatctgattgtgcagttggtagcagcatgcaga |
406 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
35355194 |
tgatctgattgtgcagttcgtagcagcatgcaga |
35355227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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