View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4037_high_10 (Length: 248)
Name: NF4037_high_10
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2151446 - 2151223
Alignment:
| Q |
1 |
ctcttactaatttgtggaattcatcatgtagtaaaattgggtttgctaaggttccagtcaaaaataattctggtgaaccaatggtaatcaatgatggact |
100 |
Q |
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| T |
2151446 |
ctcttactaatttgtggaattcatcgtgtagtaaaattgggtttgctaaggttccagtcacaaataattctggtgaaccaatggtaat---------act |
2151356 |
T |
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| Q |
101 |
aaactctgatatattattgcgatggaataaacctctttgtaagtgtgaagcagatcaatcttgtggctttctagccgatacgggtctttatgttacttgt |
200 |
Q |
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| T |
2151355 |
aaactctgatatattattgcgatggaatacacctctttgtaagtgtgaagcagatcaatcttgtggctttctagccgatacgggtctttctgttacttgt |
2151256 |
T |
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| Q |
201 |
tacgatacaaacggttattttggtcccccaggt |
233 |
Q |
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| T |
2151255 |
tacgatacaaacggttattttggtcccccaggt |
2151223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 2141866 - 2141741
Alignment:
| Q |
45 |
gctaaggttccagtcaaaaataattctggtgaaccaatggtaatcaatgatggactaaactctgatatattattgcgatggaataaacctctttgtaagt |
144 |
Q |
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| T |
2141866 |
gctaaggttccggtcataaataaatccggtctaccaacggtaatccacgatggactatactctgatatattgttgcgatggaatacacctctttgtagtt |
2141767 |
T |
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| Q |
145 |
gtgaagcagatcaatcttgtggcttt |
170 |
Q |
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| T |
2141766 |
gtaaagaagatcaattttgtggcttt |
2141741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 2146032 - 2145836
Alignment:
| Q |
8 |
taatttgtggaattcatcatgtagtaaaattgggtttgctaaggttccagtcaaaaataattctggtgaaccaatggtaatcaatgatggactaaactct |
107 |
Q |
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||||||||||| | |||| ||| | | ||||| | ||||||||||||||| ||| |||| || ||| |||||||||| |||| || ||||| ||||| |
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| T |
2146032 |
taatttgtggagtccatcgtgtcatgagattggatctgctaaggttccagttaaagataaatccggtcaaccaatggttatcatggaaggactttactct |
2145933 |
T |
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| Q |
108 |
gatatattattgcgatggaataaacctctttgtaagtgtgaagcagatcaatcttgtggctttctagccgatacgggtctttatgttacttgttacg |
204 |
Q |
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| T |
2145932 |
aatttaatgttgcgatggaatacacctctttgtggttgcaaagcaccacaatattgtggctttgcatcggataggggtcttgatgttacttgttacg |
2145836 |
T |
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