View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4037_high_12 (Length: 244)
Name: NF4037_high_12
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_high_12 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42213667 - 42213910
Alignment:
| Q |
1 |
attccaaatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctactctgacggcttagggtctccccacagtacttgttcat |
100 |
Q |
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| T |
42213667 |
attccaaatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctactctgacggcttagggtctccccacagtacttgttcat |
42213766 |
T |
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| Q |
101 |
ccacctattacgacgctttctctgagatttcagattttgacggaacaagttactggcactctttgctaaatcttgacgaggaagacaatggatggctctc |
200 |
Q |
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| T |
42213767 |
ccacctattacgacgctttctctgagatttcagattttgacggaacaagttacgggcactctttgctaagtcttgacgaggaagacaatggatggctctc |
42213866 |
T |
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| Q |
201 |
agattcaatgacatctgagaacccttcaactcccctatgctact |
244 |
Q |
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| T |
42213867 |
agattcaatgatatctgagaacccttcaactcctctaagctact |
42213910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 42206834 - 42207079
Alignment:
| Q |
1 |
attccaaatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctactctgacggcttagggtctccccacagtacttgttcat |
100 |
Q |
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| T |
42206834 |
attccaaatgaaagaagagataatatcaatgatgcaactgctgtagatgatgcacttagctactctgagggctcagggtctccccatagtacttgttcat |
42206933 |
T |
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| Q |
101 |
ccacctattacgacgctttctctgagatttcagattttgacggaacaagttactggcactctttgctaaatcttgacgaggaagacaatggatggctct- |
199 |
Q |
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| T |
42206934 |
ccacctattatgacgttttctccgagatttcagattttgatagaactagttaccggcactctttgctaagtcttgaagaggaagacattgattgggtctc |
42207033 |
T |
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| Q |
200 |
--cagattcaatgacatctgagaacccttcaactcccctatgctac |
243 |
Q |
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| T |
42207034 |
agcagattcaatgacacctgagaatccttcaactcctctaagctac |
42207079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 42214214 - 42214295
Alignment:
| Q |
146 |
caagttactggcactctttgctaaatcttgacgaggaagacaatggatggctctcagattcaatgacatctgagaacccttc |
227 |
Q |
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| T |
42214214 |
caagttactcgcattctttactaagtcttgaagaggaagactctgcatggctctcagattcaatgatctctgaggacccttc |
42214295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 42214013 - 42214094
Alignment:
| Q |
146 |
caagttactggcactctttgctaaatcttgacgaggaagacaatggatggctctcagattcaatgacatctgagaacccttc |
227 |
Q |
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| T |
42214013 |
caagttactcgcattctttactaagtcttgaagaggaagactctgaatggctttcagattcaatggtatctgagaatccttc |
42214094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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