View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4037_high_16 (Length: 227)
Name: NF4037_high_16
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_high_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 42213370 - 42213600
Alignment:
| Q |
6 |
actgctcacctttgtaatatgagaaagcaagtagcttttatttgcactcaagtatcatcatcaaagagaaacactgatcttcgtgaatgccgt------- |
98 |
Q |
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| T |
42213370 |
actgctcacctttgtaatatgagaaagcaagtagcttttatttgcactcaagtatcatcatcaaagagaaacactgatcttcgtgaatgccgtggtgacc |
42213469 |
T |
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| Q |
99 |
--ggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcgattctggtgcgaacatctggttggctttctggttgtgttt |
196 |
Q |
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| T |
42213470 |
gtggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcaattctggtgcgaacatctggttggctttctggttgtgttt |
42213569 |
T |
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| Q |
197 |
agtaacaagctcctactttctgttgagcaaa |
227 |
Q |
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| T |
42213570 |
agtaacaagctcctactttctgttgagcaaa |
42213600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 42206640 - 42206763
Alignment:
| Q |
100 |
gtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcgattctggtgcgaacatctggttggctttctggttgtgtttagt |
199 |
Q |
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|||||| ||||| ||||||| |||||||||||||||| |||||||||||||||||| ||| | ||| |||| ||||||| |||| |||||||||||||| |
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| T |
42206640 |
gtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaacagctggttgcctttttggttgtgtttagt |
42206739 |
T |
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| Q |
200 |
aacaagctcctactttctgttgag |
223 |
Q |
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| T |
42206740 |
gacaagctcctactttctgttgag |
42206763 |
T |
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