View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4037_high_2 (Length: 414)
Name: NF4037_high_2
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 5637641 - 5638019
Alignment:
| Q |
18 |
aggtgaagaagatagcttgtgataaatgtcaagccaaaggttattttccatgtcctgaatgttctaaactataatcagtgtggttttatcttctttgctt |
117 |
Q |
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| T |
5637641 |
aggtgaagaagatagcttgtgataaatgtcaagccaaaggttattttccatgtcctgaatgttctaaactataatcagtgtggttttatcttctttgctt |
5637740 |
T |
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| Q |
118 |
ataagtattttctttcttacattattgaatctcaacatgtaacattttgattattatgatcccctcagacatggtggtatatgtaacaaaagtttatctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5637741 |
ataagtattttctttcttacattattgaatctcaacatgtaacattttgattattatgatcccctcagacatggtggtatacgtaacaaaagtttatctt |
5637840 |
T |
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| Q |
218 |
ctgctactcatgtccgaatccagctttttaatcgagattcttcgtannnnnnnggttttcactcgcagtatctctggagtaaaggatttaggattcttag |
317 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5637841 |
ctgctactcatgtccgaatcctgcttttttatcgagattcttcgtatgtttttggttttcactcgcagtatctctggagtaaaggatttaggattcttag |
5637940 |
T |
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| Q |
318 |
tatgtactgttgtgttttcgtgatattcaaaagtaagaagttccacattgcgtggtattatgacattttgcgagtttat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5637941 |
tatgtactgttgtgttttcgtgatattcaaaagtaagaagttccacattgcgtggtattatgacattttgcgagtttat |
5638019 |
T |
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