View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4037_high_3 (Length: 381)
Name: NF4037_high_3
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_high_3 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr1 (7 HSPs) |
| |
|
| [»] chr6 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 20848015 - 20848395
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20848015 |
aaatgaaatataatataaacgacaaccaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
20848114 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20848115 |
aatcaactaatgcccgcacaaaggaacggggcctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
20848214 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20848215 |
gtttaatggcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatttcccatacagttgcaaaccaaat |
20848314 |
T |
|
| Q |
301 |
caaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
381 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20848315 |
caaatgcataagagaacatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
20848395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 1118300 - 1118592
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||| |
|
|
| T |
1118300 |
aaatgaaatataatataaacgacagccaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcaaacagagcaatcaaa |
1118399 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
1118400 |
aatcaaccaatgcccgcacaaaggaacggggtctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaaagaggaaa |
1118499 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
1118500 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcatttctttccataactcccataccgttgcaa |
1118592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 35503900 - 35503837
Alignment:
| Q |
248 |
aaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataa |
311 |
Q |
| |
|
||||| |||| ||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
35503900 |
aaaatcctgttatttctttctttccatatttcccaaacagtagcaaaccaaattaaatgcataa |
35503837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 7516454 - 7516536
Alignment:
| Q |
290 |
gcaaaccaaatcaaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaat |
372 |
Q |
| |
|
||||||||||||| ||||||||| || |||| | ||||| || ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
7516454 |
gcaaaccaaatcagatgcataagcgaacatcgagattttccatagcctgaagaagtaccaaactgatagaaatgatccacaat |
7516536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 28230783 - 28230844
Alignment:
| Q |
145 |
atgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaagtttaa |
206 |
Q |
| |
|
|||||||| |||| |||| ||| |||||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
28230783 |
atgaaaactataatgaaaaacaataaatttagctttaaaccaccaaaaggaaagaagcttaa |
28230844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 44781784 - 44781836
Alignment:
| Q |
248 |
aaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
|||||||||| ||| ||||||||||| || ||||| ||||| ||||||||||| |
|
|
| T |
44781784 |
aaaattctgttatttctttctttccaaatttcccacacagtagcaaaccaaat |
44781836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 26678316 - 26678696
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26678316 |
aaatgaaatataataaaaacgacagccaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
26678415 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26678416 |
aatcaactaatgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
26678515 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26678516 |
gtttaatggcctccaacatttgataatgagaacgttcttgaccacgaaaagttctatcattcctttctttccatatctcccatacagttgcaaaccaaat |
26678615 |
T |
|
| Q |
301 |
caaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
381 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26678616 |
caaatgtataagagagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
26678696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 10290707 - 10290327
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||| ||| |||| |
|
|
| T |
10290707 |
aaatgaaatataatataaacgacaaccaatcttcacggcacaaggtgtaccattgaagaccgctcaaaaattacaaacaagttcaaacagagcaatcaaa |
10290608 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
||||||| || |||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10290607 |
aatcaaccaatgcccgcacaaaggaacagggtctggcaccaatcataaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaaagagagaa |
10290508 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10290507 |
gtttaatagtctccaacatttgataatgagaacgttcttgaccatgaaaaatcatgtcattcctttctttccataactcccatacagttgcaaaccaaat |
10290408 |
T |
|
| Q |
301 |
caaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
381 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10290407 |
caaatgcataagtgagcatcttgattttccgtaacctgaagaagtgccaaattgatgaaaatgatccacaatgttacccgg |
10290327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 375
Target Start/End: Complemental strand, 32991889 - 32991767
Alignment:
| Q |
253 |
tctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaac |
352 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||| | ||||||||||||||||||| |||||||||| | | || || ||||||| || | |||||| |
|
|
| T |
32991889 |
tctgtcatttctttccttccatatcacccatgaggaagcaaaccaaatcaaatgcaatagagagcatcgtgatttgccaaaacctgatgatgaaccaaac |
32991790 |
T |
|
| Q |
353 |
tgatgaaaatgatccacaatgtt |
375 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
32991789 |
tgatgaaaatgatcaacaatgtt |
32991767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 5278798 - 5278418
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278798 |
aaatgaaatataatataaacgacagccaatcttcacggcacaaggtgtaccactgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
5278699 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5278698 |
aatcaactaatgcccgcacaaaggaacggggcctagcaccaatcatgaaaacaataaggaaatacagtaaatttaaccttaaaccaccaaaacgagagaa |
5278599 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278598 |
gtttaatggcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
5278499 |
T |
|
| Q |
301 |
caaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
381 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278498 |
caaatgcttaagagagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
5278418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 30651272 - 30651185
Alignment:
| Q |
225 |
aatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataag |
312 |
Q |
| |
|
||||||||| ||||||||| | ||||| ||||||||||||||||||||| | |||| | ||| ||||| ||||||||||||||||| |
|
|
| T |
30651272 |
aatgagaacattcttgaccgtggaaaatcatgtcattcctttctttccataacacccacagagtagcaaatcaaatcaaatgcataag |
30651185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 12656892 - 12656852
Alignment:
| Q |
332 |
taacctgaagaagtgccaaactgatgaaaatgatccacaat |
372 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12656892 |
taacatgaagaagtaccaaactgatgaaaatgatccacaat |
12656852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 44889197 - 44889249
Alignment:
| Q |
248 |
aaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
44889197 |
aaaattctgttatttctttctttccatatttcccaaacagtagcaaaccaaat |
44889249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 8397857 - 8397902
Alignment:
| Q |
263 |
ctttctttccatatctcccatacagttgcaaaccaaatcaaatgca |
308 |
Q |
| |
|
|||| ||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
8397857 |
ctttatttccatatttcccacacagtagcaaaccaaatcaaatgca |
8397902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 33134347 - 33134295
Alignment:
| Q |
248 |
aaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
|||||||| | ||| |||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
33134347 |
aaaattctattatttctttctttccatatttcccaaacagtagcaaaccaaat |
33134295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 48610928 - 48610988
Alignment:
| Q |
248 |
aaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgca |
308 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||| ||||| ||| ||||||||||||||| |
|
|
| T |
48610928 |
aaaattctgctatttctttctttccatatttcccccacagtagcataccaaatcaaatgca |
48610988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 6017570 - 6017950
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6017570 |
aaatgaaatataatataaacgacaggcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
6017669 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6017670 |
aatcaactaatgcccacacaaaggaacggggcctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
6017769 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6017770 |
gtttaatggcctccaacatttgataatgagaacgttcttgatcgcgaaaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
6017869 |
T |
|
| Q |
301 |
caaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
381 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6017870 |
caaatgcataagagagcatcttaattttccgtaacctgaagaagtgccaaactgataaaaatgatccacaatgttacccgg |
6017950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 5696993 - 5696613
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5696993 |
aaatgaaatataatataaacgacagccaatcttcacggcacaaggtgtaccattcaagactgcccaaaagttacaaacaagttcagataggacaaacaaa |
5696894 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5696893 |
aatcaactaatgcccgcacaaaggaacggggcctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
5696794 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
5696793 |
gtttaatggcctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgcaagctaaat |
5696694 |
T |
|
| Q |
301 |
caaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
381 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5696693 |
caaatgcataagagagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
5696613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Complemental strand, 25036831 - 25036461
Alignment:
| Q |
11 |
taatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaaaatcaactaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| || |
|
|
| T |
25036831 |
taatataaacgacagtcaatcttcacggcacaaggtgtatcattgaagaccgtccaaaagttataaacaagttcagatagagcaaacaaaaatcaaccaa |
25036732 |
T |
|
| Q |
111 |
cgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaagtttaatagc |
210 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25036731 |
tgcccgcacaaaggaacggggcctgacaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaaagagagaagtttaatagt |
25036632 |
T |
|
| Q |
211 |
ctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25036631 |
ctccaacatttgataatgagaacgttcttgaccacgaaaaatcctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcata |
25036532 |
T |
|
| Q |
311 |
agagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
381 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25036531 |
agtgagcatcttaattttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccgg |
25036461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 8644046 - 8643669
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| | ||| ||| |||| |
|
|
| T |
8644046 |
aaatgaaatatattataaacgacagccaatcttcacagcacaaggtgtaccattgaagaccgtccaaaagttacaaatctgttcaaacagagcaatcaaa |
8643947 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
||||||| || ||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
8643946 |
aatcaaccaatgcctgcacaaaggaaaggggtctggcaccaatcatgaaaataataaggaaatacagtcaatttagccttaaaccaccaaaaagagagaa |
8643847 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
8643846 |
gtttaataccctccaacatttgataatgagaacgttttttaccacgaaaaatcctgtcattcctttcttcccataactccc--acagttgcaaaccaaat |
8643749 |
T |
|
| Q |
301 |
caaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacccg |
380 |
Q |
| |
|
|||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8643748 |
caaatgaataagtgagcatcttgattttccgtaacctgaacaagtgccaaactgatgaaaatgatccacaatgttacccg |
8643669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 14362058 - 14362094
Alignment:
| Q |
332 |
taacctgaagaagtgccaaactgatgaaaatgatcca |
368 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14362058 |
taacctgaagaagtaccaaactgatgaaaatgatcca |
14362094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 5667490 - 5667543
Alignment:
| Q |
247 |
aaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
||||||||||| ||||||||| ||||| || ||||| || |||||||||||||| |
|
|
| T |
5667490 |
aaaaattctgttattcctttccttccaaatttcccaaactgttgcaaaccaaat |
5667543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 31759209 - 31759548
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | | ||| |||| |
|
|
| T |
31759209 |
aaatgaaatataatataaacgacaaccaatcttcacggcataaggtgtaccattgaagaccgcccaaaagttacaaacaagttcaaacaaagcaatcaaa |
31759308 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31759309 |
aatcaaccaatgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaaagagagaa |
31759408 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaat |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
31759409 |
gtttaatagcctccaacatttgaaaatgacaacgttcttgaccacgaaaaatcctgtcattcctttctttccataattcccacacaggtgcaaaccaaat |
31759508 |
T |
|
| Q |
301 |
caaatgcataagagagcatcttaactttccgtaacctgaa |
340 |
Q |
| |
|
||||| |||||| ||||||||| | ||||||||||||||| |
|
|
| T |
31759509 |
caaatacataagtgagcatcttgattttccgtaacctgaa |
31759548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 23409612 - 23409569
Alignment:
| Q |
330 |
cgtaacctgaagaagtgccaaactgatgaaaatgatccacaatg |
373 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
23409612 |
cgtaacctgaagaggtaccaaactgatgaaaatgatccacaatg |
23409569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 31124236 - 31124176
Alignment:
| Q |
248 |
aaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgca |
308 |
Q |
| |
|
||||| |||| ||| ||||||||||| || ||||| ||||| ||||||||||||||||||| |
|
|
| T |
31124236 |
aaaatcctgttatttctttctttccagatttcccacacagtagcaaaccaaatcaaatgca |
31124176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 36438827 - 36439062
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcagatagaacaaacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
36438827 |
aaatgaaatataatataaacgacagtcaatcttcacgacacaaggtgtaccattgaagaccgcccaaaagttacaaacaagttcaaagagaacaatcaaa |
36438926 |
T |
|
| Q |
101 |
aatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaa |
200 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36438927 |
aatcaaccaatgcccgcacaaa----------------ccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaaagagagaa |
36439010 |
T |
|
| Q |
201 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36439011 |
gtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaat |
36439062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 29 - 376
Target Start/End: Complemental strand, 34793297 - 34792960
Alignment:
| Q |
29 |
atcttcacggcacaaggtgtaccattgaagaccgcccaaaagttaca-aacaagttcagatagaacaaacaaaaatcaactaacgcccgcacaaaggaac |
127 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||| | || | ||| || | |||||||| | | ||||||||||| | || |||||||||||| || |
|
|
| T |
34793297 |
atctttacggcacaaggtgtacctttgaagacagccaagaaat-acataatatgttcagatgtagctaacaaaaatcagccaatgcccgcacaaagaaaa |
34793199 |
T |
|
| Q |
128 |
ggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaagtttaatagcctccaacatttgataat |
227 |
Q |
| |
|
||||| ||||| |||| ||||||||||||| |||||||| ||||||||| |||||||||||||| || || |||||||||||||||| | |||||||| |
|
|
| T |
34793198 |
ggggcttggcatcaattatgaaaacaataacgaaatacataaaatttagctttaaaccaccaaaaggatagcagtttaatagcctccacaagttgataat |
34793099 |
T |
|
| Q |
228 |
gagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataagagagcatcttaactt |
327 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||| | || |
|
|
| T |
34793098 |
gagaacg----------cgaaaaatcctgtcattcctttctttccataacacccatacagtagcaaaccaaatcaaatgcataagtgagcatcttgattt |
34793009 |
T |
|
| Q |
328 |
tccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgtta |
376 |
Q |
| |
|
||| ||||| || |||| ||||||||| | ||||||||| | ||||||| |
|
|
| T |
34793008 |
tccataacccgatgaagagccaaactggtaaaaatgatctataatgtta |
34792960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40076771 - 40076819
Alignment:
| Q |
1 |
aaatgaaatataatataaacgacagtcaatcttcacggcacaaggtgta |
49 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
40076771 |
aaatgaaatataatataaacgacaatcaatcttcacggcacaatgtgta |
40076819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 37237931 - 37237983
Alignment:
| Q |
254 |
ctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatg |
306 |
Q |
| |
|
|||| ||| |||||||| ||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
37237931 |
ctgttatttctttctttacatatttcccacacagtagcaaaccaaatcaaatg |
37237983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 93 - 378
Target Start/End: Complemental strand, 4373015 - 4372730
Alignment:
| Q |
93 |
caaacaaaaatcaactaacgcccgcacaaaggaacggggcctggcaccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaa |
192 |
Q |
| |
|
||||||||||||| | || ||| |||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4373015 |
caaacaaaaatcagccaatgcctgcacaaagaaacgaggcttggcaccaataatgaaaacaataaggaaatacagtaaatttagctctaaaccaccaaaa |
4372916 |
T |
|
| Q |
193 |
cgagagaagtttaatagcctccaacatttgataatgagaacgttcttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgca |
292 |
Q |
| |
|
| | |||| |||||||||||||| | |||| || |||| |||||||| | | ||||| |||||||| |||| ||||||| | |||| ||| ||||| |
|
|
| T |
4372915 |
tgtgtgaagcttaatagcctccaaaaattgagaaggagaccgttcttgttcgcagaaaatcatgtcattcatttccttccataacacccacacacttgca |
4372816 |
T |
|
| Q |
293 |
aaccaaatcaaatgcataagagagcatcttaactttccgtaacctgaagaagtgccaaactgatgaaaatgatccacaatgttacc |
378 |
Q |
| |
|
||||||||||||||||||| ||||||||| | ||||| | ||||||||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
4372815 |
aaccaaatcaaatgcataattgagcatcttgattttccattacctgaagaagtgtcaaactgataaaaatgatctacaatgttacc |
4372730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 365
Target Start/End: Complemental strand, 12716191 - 12715964
Alignment:
| Q |
137 |
caccaatcatgaaaacaataaggaaatacagtaaatttagccttaaaccaccaaaacgagagaagtttaatagcctccaacatttgataatgagaacgtt |
236 |
Q |
| |
|
||||||| |||||||| ||||||||| || ||||||| | ||| ||||||||| || || |||| || |||||||| || ||||| |||| |||| |
|
|
| T |
12716191 |
caccaattatgaaaactataaggaaaagcaacaaatttaactttataccaccaaat-gataggagttcaacggcctccaaaatctgatagggagatcgtt |
12716093 |
T |
|
| Q |
237 |
cttgaccacgaaaaattctgtcattcctttctttccatatctcccatacagttgcaaaccaaatcaaatgcataagagagcatcttaactttccgtaacc |
336 |
Q |
| |
|
|||||||||| || | | || |||||||| ||||||| | ||| ||| ||||||||||||||||||||| ||||| ||||||| | || || ||| |
|
|
| T |
12716092 |
cttgaccacggaataacatttcgttcctttccttccataacatccacacatttgcaaaccaaatcaaatgcaaaagagggcatcttgatttgccaaaacg |
12715993 |
T |
|
| Q |
337 |
tgaagaagtgccaaactgatgaaaatgat |
365 |
Q |
| |
|
| |||||||| ||||||||| |||||||| |
|
|
| T |
12715992 |
taaagaagtgtcaaactgataaaaatgat |
12715964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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