View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4037_low_1 (Length: 436)
Name: NF4037_low_1
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 28546924 - 28546492
Alignment:
| Q |
1 |
acaatgtcaatgaacataatgaatatccttacatgaggtccttatagctttgtacctcttcaaagacttgacgctgttgnnnnnnnaatgaacctaatga |
100 |
Q |
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| T |
28546924 |
acaatgtcaatgaacataatgaatatccttacatgaggtccttatagctttgtacctcttcaaagacttcacgctcttgtttttttaataaacctaatga |
28546825 |
T |
|
| Q |
101 |
atatccttacatccttctaatctatttgttttcatgacaatctccaaccacaaatcacaatatgaacatactcacacacacaaaaccaaatcttgtatac |
200 |
Q |
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| T |
28546824 |
atatccttacatccttctaatctatttgttttcatgacaatctccaaccacaaatcacaatatgaacatactcacacacacaaaaccaaatcttgtatac |
28546725 |
T |
|
| Q |
201 |
tataatctatatcactatgatggaaatccattataggtaataatgccaaagggtcaacttagtgagaaatgagaaagttttggtcactacggcgtatttg |
300 |
Q |
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| T |
28546724 |
tataatctatatcactatgatggaaatccattataggtaataatgccaaagggtcaacttagtgagaaatgagaaagttttggtcactacggcgtatttg |
28546625 |
T |
|
| Q |
301 |
tgctttcttacgattgtaagactgcttgcttgtgaacccccatttactagtatattcagactctaaggatta-------aggataaannnnnnnaagata |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||| |
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| T |
28546624 |
tgctttcttacgattgtaagactgcttgcttgtgaacccccatttactagtatattcagactttaaggattaaggaataaggataaaaaaatttaatata |
28546525 |
T |
|
| Q |
394 |
tcaaacaatacttgcaattaaattcctcctatg |
426 |
Q |
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| T |
28546524 |
tcaaacaatacttgcaattaaattcctcctatg |
28546492 |
T |
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