View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4037_low_13 (Length: 234)
Name: NF4037_low_13
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 39601044 - 39601246
Alignment:
| Q |
15 |
tagggcaataatgagatactatgctgaaaaatatagatctcaaggggttgagttactaggaaagacaatagaagaaaagggccttgtggaacaatggtta |
114 |
Q |
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| T |
39601044 |
tagggcaataatgagatactatgctgaaaaatatagatctcaaggggttgagttactaggaaagacaatagaagaaaagggtcttgtggaacaatggtta |
39601143 |
T |
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| Q |
115 |
gaagttgaagcacataatttccacccatcagcatacaatttgacctgtcatgttttgtttccttcactactagttgacggcactccagatccaaaggtaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | || |||||||||||||||||| |
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| T |
39601144 |
gaagttgaagcacataatttccacccatcagcatacaatttgacctgtcatgttttgtgtcctacactactaggtggcagctctccagatccaaaggtaa |
39601243 |
T |
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| Q |
215 |
ttg |
217 |
Q |
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||| |
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| T |
39601244 |
ttg |
39601246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 39611865 - 39612067
Alignment:
| Q |
15 |
tagggcaataatgagatactatgctgaaaaatatagatctcaaggggttgagttactaggaaagacaatagaagaaaagggccttgtggaacaatggtta |
114 |
Q |
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| T |
39611865 |
tagggcaataatgagatattatgcagaaaaatatagatctcaaggggttgagttgctaggaaagacaatagaagaaaagggtcttgtggaacaatggtta |
39611964 |
T |
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| Q |
115 |
gaagttgaagcacataatttccacccatcagcatacaatttgacctgtcatgttttgtttccttcactactagttgacggcactccagatccaaaggtaa |
214 |
Q |
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| T |
39611965 |
gaagttgaagcacacaactttaacccaccagcttacaacttggtcattcatgttttgtttccttcactactggttgacggcactccagatccaaaggtaa |
39612064 |
T |
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| Q |
215 |
ttg |
217 |
Q |
| |
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||| |
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| T |
39612065 |
ttg |
39612067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 17647082 - 17647192
Alignment:
| Q |
31 |
tactatgctgaaaaatatagatctcaaggggttgagttactaggaaagacaatagaagaaaagggccttgtggaacaatggttagaagttgaagcacata |
130 |
Q |
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|||||||||||||| || | | ||||||| ||| || || ||||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||| |
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| T |
17647082 |
tactatgctgaaaagtacaaaaatcaagggactgatttgcttggaaagacaatagaagaaaggggtcttgtggagcaatggctagaagttgaagcacata |
17647181 |
T |
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| Q |
131 |
atttccaccca |
141 |
Q |
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| ||| ||||| |
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| T |
17647182 |
acttcaaccca |
17647192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 17573025 - 17572955
Alignment:
| Q |
71 |
taggaaagacaatagaagaaaagggccttgtggaacaatggttagaagttgaagcacataatttccaccca |
141 |
Q |
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| T |
17573025 |
taggaaagacggtagaagaaaggggtcttgtggaacaatggcttgaagtggaagcacataactttcaccca |
17572955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 34774287 - 34774385
Alignment:
| Q |
120 |
tgaagcacataatttccacccatcagcatacaattt-gacctgtcatgttttgtttccttcactactagttgacggcactccagatccaaaggtaattg |
217 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||| ||||| |||||||||| |||||||||||||| || ||||| |||||| || |||||||||| |
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| T |
34774287 |
tgaagcacatatcttccacccaccagcatacaattttgacctatcatgttttgcgtccttcactactagctggcggcaatccagagcctaaggtaattg |
34774385 |
T |
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