View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4037_low_15 (Length: 231)

Name: NF4037_low_15
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4037_low_15
NF4037_low_15
[»] chr1 (13 HSPs)
chr1 (16-209)||(9257543-9257736)
chr1 (21-208)||(9299979-9300166)
chr1 (15-171)||(8926830-8926986)
chr1 (18-210)||(8939259-8939451)
chr1 (23-208)||(9364284-9364469)
chr1 (16-208)||(9242575-9242767)
chr1 (23-208)||(9337425-9337610)
chr1 (15-210)||(8962183-8962378)
chr1 (18-209)||(9466768-9466959)
chr1 (21-167)||(9377603-9377749)
chr1 (21-163)||(9236488-9236630)
chr1 (15-73)||(8861971-8862029)
chr1 (15-133)||(8979311-8979429)
[»] chr3 (1 HSPs)
chr3 (14-171)||(9171375-9171532)
[»] scaffold0690 (1 HSPs)
scaffold0690 (16-208)||(1486-1678)
[»] chr6 (1 HSPs)
chr6 (16-208)||(15910428-15910620)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 9257736 - 9257543
Alignment:
Q  16 cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt 115  Q
    |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9257736 cagaaggagatgggaaggagttcataaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatt 9257637  T
Q  116 tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggac 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  9257636 tcatcgtgctctagtctatgacttcttcccaaatggttcgttgcagaaattcatttctcctcctagcaacgaagatagtttccttggatgggac 9257543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 9299979 - 9300166
Alignment:
Q  21 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 120  Q
    |||||||| ||||||||||||||||||||||||||  |||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  9299979 ggagatgggaaggagttcataaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatc 9300078  T
Q  121 gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatggga 208  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9300079 gtgctctagtctatgacttcttcccaagtggttcgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatggga 9300166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 8926830 - 8926986
Alignment:
Q  15 acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat 114  Q
    |||||||||||||| |  |||||||||||||| ||||||||| |||| |||||||| ||| | |||| ||| || |||||| ||||||||||||||||||    
T  8926830 acagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggat 8926929  T
Q  115 ttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 171  Q
    || |||||||||| || |||||||| ||||| |||| ||||||||| || |||||||    
T  8926930 tttatcgtgctctggtttatgactttttcccgaatggttcgttgcaaaacttcattt 8926986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 8939259 - 8939451
Alignment:
Q  18 gagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttc 117  Q
    ||||||||||| |  |||||||||||||||||||||||| |||| ||||| || ||| | |||| |||||| |||||| ||||||||||||||||||||     
T  8939259 gagggagatgggagagagttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatggatttt 8939358  T
Q  118 atcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggact 210  Q
    |||||||| | || |||||||| |||||||||| ||| ||||| || ||||||| | | |||  |||||| |||  ||||||||| |||||||    
T  8939359 atcgtgctttggtttatgactttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggact 8939451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 9364284 - 9364469
Alignment:
Q  23 agatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgt 122  Q
    |||||| ||||| ||||||||||||||||||||  |||| ||||| |||||||||||||  || || |||||| |||| || || ||||| |||| ||||    
T  9364284 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgcttggcttctgcgcagatggttttcgtcgt 9364383  T
Q  123 gctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatggga 208  Q
    ||| ||||||||||||| ||  |||||| |||||||||||||||||||| |||  | | || |||||||  |||||||||||||||    
T  9364384 gctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatggga 9364469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 9242767 - 9242575
Alignment:
Q  16 cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt 115  Q
    |||||| |||||| ||||| ||||||||||||||||||||  |||| || || || ||||| ||||  || || |||||| |||  || || ||||||||    
T  9242767 cagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttgcttggctactgcgcggatggatt 9242668  T
Q  116 tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatggga 208  Q
    ||  |||||| ||||||||||||| |||||||||| |||||||||||||||||||| | | || | ||||||||||  |||||||||||||||    
T  9242667 tcgccgtgctttagtctatgactttttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatgatttccttggatggga 9242575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 9337425 - 9337610
Alignment:
Q  23 agatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgt 122  Q
    |||||| ||||| ||||||||||||||||||||  |||| ||||| |||||||||||||  || || |||||  |||| || || ||||| |||| ||||    
T  9337425 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgctcggcttctgcgcagatggttttcgtcgt 9337524  T
Q  123 gctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatggga 208  Q
    ||| ||||||||||||| ||  |||||| |||||||||||||||||||| |||  | | || |||||||  |||||||||||||||    
T  9337525 gctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatggga 9337610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 8962183 - 8962378
Alignment:
Q  15 acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat 114  Q
    ||||| |||||||| |  ||||||||||||||||| |||||| |||| |||||||| ||| | |||| |||||| || ||| ||||||| || |||||||    
T  8962183 acagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttggcttttgcgctgatggat 8962282  T
Q  115 ttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggact 210  Q
    || |||||||| | || |||||||| ||||| |||| ||||||||| || ||||||| | | |||  |||||| |||  ||||||||| |||||||    
T  8962283 tttatcgtgctttggtttatgactttttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggact 8962378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 9466959 - 9466768
Alignment:
Q  18 gagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttc 117  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||| |||| |||||| |||||| |||| || || |||||||||     
T  9466959 gagggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgcttggcttctgcgctgatggatttt 9466860  T
Q  118 atcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggac 209  Q
    | || | | ||||||| ||  | || |||| || ||| |||||||||||  ||| ||| || | ||||||||||  ||| ||||||||||||    
T  9466859 accgcggtttagtctacgatctttttccaagtggttctttgcagaaatttctttctccaccaaacaacaaagatgcttttcttggatgggac 9466768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 9377603 - 9377749
Alignment:
Q  21 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 120  Q
    ||||||||||| || ||||| ||||||||  ||||| |||| ||||| || ||| |||||| ||| ||||||||  | || ||||| |||||||| || |    
T  9377603 ggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgttgttcgcttgctcggattctgtgctgatggattccacc 9377702  T
Q  121 gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattc 167  Q
    ||||||| |||||||| ||||| |||||||  |||||||| ||||||    
T  9377703 gtgctcttgtctatgatttctttccaaatgggtcgttgcaaaaattc 9377749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 9236630 - 9236488
Alignment:
Q  21 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 120  Q
    ||||||||||| || ||||| || ||||| |||||| |||| ||||| || ||| |||||| ||| ||||| ||  | |||||||| |||||||| || |    
T  9236630 ggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccacc 9236531  T
Q  121 gtgctctagtctatgacttcttcccaaatgattcgttgcagaa 163  Q
    ||||||| |||||||| ||||| || ||||  || ||||||||    
T  9236530 gtgctcttgtctatgatttctttccgaatggctccttgcagaa 9236488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 8862029 - 8861971
Alignment:
Q  15 acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccacca 73  Q
    ||||||||||| || || |||||||| ||||||||||||| | |||| |||||||||||    
T  8862029 acagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccacca 8861971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 8979429 - 8979311
Alignment:
Q  15 acagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggat 114  Q
    ||||| ||||| || || |||||||| |  |||||||||| | |||| |||||||||||  |||||| ||| || |||||| |||| ||||| || |||     
T  8979429 acagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttctgtgcagagggaa 8979330  T
Q  115 ttcatcgtgctctagtcta 133  Q
    ||||||||| ||| |||||    
T  8979329 ttcatcgtgttcttgtcta 8979311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 9171375 - 9171532
Alignment:
Q  14 cacagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatgga 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||| |||||| ||||||| |||||||||    
T  9171375 cacagagggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggcttttgcgccgatgga 9171474  T
Q  114 tttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 171  Q
    ||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||    
T  9171475 tttcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcattt 9171532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 1486 - 1678
Alignment:
Q  16 cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt 115  Q
    ||||||||||||| ||||| ||||||||||||||||||||  |||| |||||||||||||||||||  || || |||||| ||||||| || ||||| ||    
T  1486 cagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttggcttttgcgcagatggttt 1585  T
Q  116 tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatggga 208  Q
    || ||||||| |||| |||||||| || ||||||| |||||| ||||||||||| | ||  |  | ||||||||||  |||||||||||||||    
T  1586 tcgtcgtgctttagtttatgacttttttccaaatggttcgttacagaaattcatatctcacctgaacaacaaagatgatttccttggatggga 1678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15910620 - 15910428
Alignment:
Q  16 cagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatt 115  Q
    ||||||||||||| ||||| ||||||||||||||||||||  |||| |||||||||||||||||||  || || |||||  |||||||  | ||||| ||    
T  15910620 cagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgctcggcttttgctcagatggttt 15910521  T
Q  116 tcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatggga 208  Q
    |||||||||| |||| |||||||| || ||||||| |||||| || |||||||| | ||  || | ||||||||||  |||||||||||||||    
T  15910520 tcatcgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcatatctcacccgaacaacaaagatgatttccttggatggga 15910428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University