View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4037_low_5 (Length: 343)
Name: NF4037_low_5
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 39800271 - 39800587
Alignment:
| Q |
17 |
agttttaccccttaatttctttcatgaggaagtgatctgaatcatgttgtagaactataacataataattatttttaccctgatggatgttacgttctta |
116 |
Q |
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| T |
39800271 |
agttttaccccttaatttctttcatgaggaagtgatctgaatcatgttgtagaactataacgtaataattatttttaccctgatggatgttacgttctta |
39800370 |
T |
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| Q |
117 |
aaaacctgaatcgcagtaaaaatttgagccctaactattgagaatgagaacaggatacttgctagcttttctactaatcagtcaacatttttctactaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39800371 |
aaaacctgaatcgcagtaaaaatttgagccctaaatattgagaatgagaacaggatacttgctagcttttctactaatcagtcaacatttttctactaat |
39800470 |
T |
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| Q |
217 |
cagtcaacctaaatgcaaaatagtatacacttttctaaaaatttgagcaagcgtacattttgcatttaagcaattatcaaatcaatttttcgtgtggaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39800471 |
cagtcaacctaaatgcaaaatagtatacacttttctaaaaatttgagcaagcgtacattttgcatttaagcaattatcaaatcaatttttcgtgtggaca |
39800570 |
T |
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| Q |
317 |
tccgtactatgcctatg |
333 |
Q |
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||||||||||||||||| |
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| T |
39800571 |
tccgtactatgcctatg |
39800587 |
T |
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