View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4037_low_6 (Length: 324)

Name: NF4037_low_6
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4037_low_6
NF4037_low_6
[»] chr7 (4 HSPs)
chr7 (18-297)||(6723953-6724231)
chr7 (53-92)||(22334221-22334260)
chr7 (54-127)||(11466937-11467010)
chr7 (99-143)||(4995902-4995945)
[»] chr8 (4 HSPs)
chr8 (49-144)||(6887069-6887164)
chr8 (80-127)||(13528979-13529026)
chr8 (80-127)||(13618518-13618565)
chr8 (47-129)||(35134469-35134551)
[»] chr4 (6 HSPs)
chr4 (23-142)||(21048325-21048442)
chr4 (69-143)||(18778301-18778375)
chr4 (74-139)||(8926417-8926482)
chr4 (22-139)||(33520140-33520256)
chr4 (61-129)||(42498738-42498807)
chr4 (53-118)||(9575847-9575912)
[»] chr5 (6 HSPs)
chr5 (21-139)||(18179294-18179410)
chr5 (69-139)||(20101000-20101070)
chr5 (70-138)||(16072261-16072329)
chr5 (70-142)||(19571017-19571090)
chr5 (61-126)||(20695926-20695991)
chr5 (21-93)||(30791619-30791690)
[»] chr2 (5 HSPs)
chr2 (49-142)||(31275245-31275338)
chr2 (75-139)||(25461225-25461289)
chr2 (77-129)||(19004576-19004628)
chr2 (23-142)||(21847297-21847415)
chr2 (179-228)||(13589906-13589955)
[»] chr1 (4 HSPs)
chr1 (10-95)||(28411531-28411614)
chr1 (35-141)||(23420498-23420602)
chr1 (53-124)||(23506766-23506837)
chr1 (47-142)||(33175505-33175600)
[»] chr3 (1 HSPs)
chr3 (56-142)||(7779421-7779507)
[»] chr6 (6 HSPs)
chr6 (20-117)||(12966952-12967047)
chr6 (20-117)||(12969138-12969233)
chr6 (20-117)||(12971324-12971419)
chr6 (49-94)||(26498765-26498810)
chr6 (23-142)||(16440501-16440618)
chr6 (239-275)||(23072516-23072552)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 6724231 - 6723953
Alignment:
Q  18 ctacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactac 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724231 ctacaaaccacttcatctctttttaattctatt-atttctaacaatttctgctaattaccaagttgaatgacaatcctgatagagacgataacttactac 6724133  T
Q  118 cttattacttgtgtacgatttggtgtcacacaacttaatgcatgcattgcgcatccaccactagctgaccacttttgaattcttcttagctacatgacat 217  Q
    ||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6724132 cttattacttgtgtatgatttggtgacacataacttaatacatgcattgcgcatccaccagtagctgaccacttttgaattcttcttagctacatgacat 6724033  T
Q  218 gcaactcatagtgcgcaacacacatctaccagtagttgaaccttatgcttttcttcatctctgccctatttaatttctcc 297  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6724032 gcaactcatagtgtgcaacacacatctaccagtagttgaaccttatgcttttcttcatctctgtcctatttaatttctcc 6723953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 22334260 - 22334221
Alignment:
Q  53 tttctaacaaattccgctaattaccaagttgaatgacaat 92  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  22334260 tttctaataaattcagctaattaccaagttgaatgacaat 22334221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 11467010 - 11466937
Alignment:
Q  54 ttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattactt 127  Q
    |||||| |||||| ||||||| | |||||||||||||||||   | ||||| ||||| |||||| |||||||||    
T  11467010 ttctaataaattctgctaattgctaagttgaatgacaatccatgtggagacaataacctactactttattactt 11466937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 4995945 - 4995902
Alignment:
Q  99 agagacgataacttactaccttattacttgtgtacgatttggtgt 143  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  4995945 agagacgataacttactactttattacttg-gtatgatttggtgt 4995902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 6887164 - 6887069
Alignment:
Q  49 tttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtgtc 144  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||  | |||||||||||||||||  ||| |||||| ||| |||||||||||    
T  6887164 tttatttctaataaattccgctaattaccaagttgaacgacaatccttgtggagacgataacttactaatttaatacttgggtatgatttggtgtc 6887069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 13529026 - 13528979
Alignment:
Q  80 gttgaatgacaatcctgatagagacgataacttactaccttattactt 127  Q
    |||||||||||||||  || |||||||||||||||||| |||||||||    
T  13529026 gttgaatgacaatccatatggagacgataacttactactttattactt 13528979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 13618565 - 13618518
Alignment:
Q  80 gttgaatgacaatcctgatagagacgataacttactaccttattactt 127  Q
    |||||||||||||||  || |||||||||||||||||| |||||||||    
T  13618565 gttgaatgacaatccatatggagacgataacttactactttattactt 13618518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 35134551 - 35134469
Alignment:
Q  47 tatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgt 129  Q
    |||||| |||||| |||||  ||||||||||||||| || ||||||||| || |||||  ||||| ||||  |||||||||||    
T  35134551 tatttacttctaataaattttgctaattaccaagttaaacgacaatccttatggagacagtaactcactattttattacttgt 35134469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 21048325 - 21048442
Alignment:
Q  23 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttat 122  Q
    |||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||||  ||||||||  |  ||||||||||||||    ||||    
T  21048325 aaccacttcatctcttta-aattct-tttatttctaataaattccgctaattaccaagttgaacaacaatccttgtgaagacgataacttacctttttat 21048422  T
Q  123 tacttgtgtacgatttggtg 142  Q
    || ||| |||||||||||||    
T  21048423 tatttgcgtacgatttggtg 21048442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 18778301 - 18778375
Alignment:
Q  69 ctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtgt 143  Q
    |||||||| |||||||| ||||||||  || || ||||||||||||||| |||||||||| |||| |||||||||    
T  18778301 ctaattacaaagttgaacgacaatccacatggaaacgataacttactactttattacttgagtacaatttggtgt 18778375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 8926417 - 8926482
Alignment:
Q  74 taccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 139  Q
    |||||||||||| ||||||||  || ||||||||||||| |||| |||||||||| ||| ||||||    
T  8926417 taccaagttgaacgacaatccctatggagacgataacttgctactttattacttgagtatgatttg 8926482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 33520140 - 33520256
Alignment:
Q  22 aaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactacctta 121  Q
    |||||| |||||||||||| ||||| |||||||| ||| ||||||| ||| ||| | ||||||| ||||||  | ||  |||  |||||||||||| |||    
T  33520140 aaaccatttcatctcttttaaattc-atttatttataataaattccactatttatcgagttgaacgacaatttttatgaagagaataacttactacttta 33520238  T
Q  122 ttacttgtgtacgatttg 139  Q
     ||||||| |||||||||    
T  33520239 ctacttgtctacgatttg 33520256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 42498738 - 42498807
Alignment:
Q  61 aaattccgctaattaccaagttgaatgacaatcctgatagagacga-taacttactaccttattacttgt 129  Q
    ||||||||||||||||||||||||| ||||||||| ||| | || | | ||||||||| |||||||||||    
T  42498738 aaattccgctaattaccaagttgaacgacaatccttataaaaacaattcacttactacattattacttgt 42498807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 9575847 - 9575912
Alignment:
Q  53 tttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactacc 118  Q
    ||||||| | ||||||||||||| ||||||||| |||||||   |||||||||| || ||||||||    
T  9575847 tttctaatatattccgctaattatcaagttgaacgacaatctctatagagacgacaatttactacc 9575912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 18179294 - 18179410
Alignment:
Q  21 caaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactacctt 120  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||| |||| ||||||||||||| || ||| |  || || || |||||||||||| ||    
T  18179294 caaaccacttcatctctttt-aattct-tttatttctaataaattctgctatttaccaagttgaaagataatgcatatggatacaataacttactacttt 18179391  T
Q  121 attacttgtgtacgatttg 139  Q
    ||||||||| || ||||||    
T  18179392 attacttgtttatgatttg 18179410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 20101000 - 20101070
Alignment:
Q  69 ctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 139  Q
    |||| |||||||||||| ||||||||| || ||||| |||||||||||| |||||||||| ||| ||||||    
T  20101000 ctaactaccaagttgaacgacaatccttatggagactataacttactactttattacttgagtatgatttg 20101070  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 16072261 - 16072329
Alignment:
Q  70 taattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgattt 138  Q
    ||||||||||||||| ||||||||||  | ||||| || ||||||||| || ||||||| |||||||||    
T  16072261 taattaccaagttgactgacaatccttgtggagacaattacttactactttcttacttgagtacgattt 16072329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 19571017 - 19571090
Alignment:
Q  70 taattaccaagttgaatgacaatcctgatagag-acgat-aacttactaccttattacttgtgtacgatttggtg 142  Q
    ||||||| ||||||||||||||||||  ||||| ||||| |||||||||| |||||| |||| ||||||||||||    
T  19571017 taattactaagttgaatgacaatccttgtagagaacgataaacttactactttattatttgt-tacgatttggtg 19571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 20695926 - 20695991
Alignment:
Q  61 aaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattact 126  Q
    |||||||  |||||||| ||||||| ||||||||   | |||||||||||||||||| ||||||||    
T  20695926 aaattcctataattaccgagttgaacgacaatccctgtggagacgataacttactactttattact 20695991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 30791619 - 30791690
Alignment:
Q  21 caaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatc 93  Q
    ||||||||||||||| || | || ||| |||||||| || ||||||||||||||| ||| ||||| |||||||    
T  30791619 caaaccacttcatcttttctaaaatct-tttatttcaaataaattccgctaattatcaatttgaacgacaatc 30791690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 31275245 - 31275338
Alignment:
Q  49 tttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 142  Q
    ||||||||||| || |||  ||| ||||||||| |||  |||||||| || |||||||||||||||||| ||||||||||| ||||||||||||    
T  31275245 tttatttctaataagttcttctatttaccaagtggaacaacaatccttatggagacgataacttactactttattacttgtttacgatttggtg 31275338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 25461225 - 25461289
Alignment:
Q  75 accaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttg 139  Q
    ||||||||||| ||||||||   | |||||||||||||||||| ||||||||||||||| |||||    
T  25461225 accaagttgaacgacaatccatttggagacgataacttactactttattacttgtgtacaatttg 25461289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 19004628 - 19004576
Alignment:
Q  77 caagttgaatgacaatcctgatagagacgataacttactaccttattacttgt 129  Q
    ||||||||| ||||||||  ||||||||||||||||||||| |||||| ||||    
T  19004628 caagttgaacgacaatccatatagagacgataacttactactttattatttgt 19004576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 21847415 - 21847297
Alignment:
Q  23 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcc-tgatagagacgataacttactacctta 121  Q
    |||||||| |||||||||  ||| | || |||||||| |||| || |||||||| ||||||||||||||||| ||| ||| |||||| |||| ||| |||    
T  21847415 aaccactttatctctttt--attattttgatttctaataaatcccactaattactaagttgaatgacaatccatga-agatacgatagcttagtacttta 21847319  T
Q  122 -ttacttgtgtacgatttggtg 142  Q
     |||||| | ||||||||||||    
T  21847318 gttacttatttacgatttggtg 21847297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 13589906 - 13589955
Alignment:
Q  179 tagctgaccacttttgaattcttcttagctacatgacatgcaactcatag 228  Q
    ||||||||||||||||||| |||||||| | |  ||||||||||||||||    
T  13589906 tagctgaccacttttgaatccttcttagatgcgcgacatgcaactcatag 13589955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 28411531 - 28411614
Alignment:
Q  10 ttaaaaaactacaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcct 95  Q
    |||||| |||||||||||||||||||||||| |||| | || |||||||| ||||||||||||||| | ||||||||| |||||||    
T  28411531 ttaaaacactacaaaccacttcatctctttt-aattttgtt-atttctaataaattccgctaattaacgagttgaatggcaatcct 28411614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 23420602 - 23420498
Alignment:
Q  35 tctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacg 134  Q
    ||||||| ||||||||   |||||| |||||| | ||||| | |||||||| |||||||||  | |||||||||||||||||| ||||||||||| ||||    
T  23420602 tctttttcattctattcgcttctaataaattc-gttaattgctaagttgaacgacaatccttgtggagacgataacttactactttattacttgt-tacg 23420505  T
Q  135 atttggt 141  Q
    |||||||    
T  23420504 atttggt 23420498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 23506766 - 23506837
Alignment:
Q  53 tttctaacaaattccgctaattaccaagttgaatgacaatc-ctgatagagacgataacttactaccttatta 124  Q
    ||||||| |||||| |||||||||||||||||| |||| || ||| |||||||||||||||||||| ||||||    
T  23506766 tttctaataaattctgctaattaccaagttgaacgacattcactg-tagagacgataacttactactttatta 23506837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 33175600 - 33175505
Alignment:
Q  47 tatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 142  Q
    |||||| |||||| ||||||| |||||| | |||||||| |||||||    | |||| ||||||||||||  ||||||||||| || |||||||||    
T  33175600 tatttacttctaataaattcctctaattgctaagttgaacgacaatctatgtggagaagataacttactattttattacttgtttatgatttggtg 33175505  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 7779507 - 7779421
Alignment:
Q  56 ctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttattacttgtgtacgatttggtg 142  Q
    |||| |||||| |||| |||||| |||||||||||||||| || ||||| ||||||||| | |||| ||||||  || |||||||||    
T  7779507 ctaataaattctgctatttaccatgttgaatgacaatccttatggagactataacttacaagcttactacttgattatgatttggtg 7779421  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 12967047 - 12966952
Alignment:
Q  20 acaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactac 117  Q
    |||||||||||||||| || | |||||| |  | |||||| |||| |||| ||||||| |||||||||| |||||  |  ||||||||||||||||||    
T  12967047 acaaaccacttcatcttttctaaattctct--acttctaataaatgccgccaattaccgagttgaatgataatccctacggagacgataacttactac 12966952  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 12969233 - 12969138
Alignment:
Q  20 acaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactac 117  Q
    |||||||||||||||| || | |||||| |  | |||||| ||||||||| ||||||| |||||||||| |||||  |  |||||||||||| |||||    
T  12969233 acaaaccacttcatcttttctaaattctct--acttctaataaattccgccaattaccgagttgaatgataatccctacggagacgataactgactac 12969138  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 12971419 - 12971324
Alignment:
Q  20 acaaaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactac 117  Q
    |||||||||||||||| || | |||||| |  | |||||| ||||||||| ||||||| |||||||||| |||||  |  |||||||||||| |||||    
T  12971419 acaaaccacttcatcttttctaaattctct--acttctaataaattccgccaattaccgagttgaatgataatccctacggagacgataactgactac 12971324  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 26498810 - 26498765
Alignment:
Q  49 tttatttctaacaaattccgctaattaccaagttgaatgacaatcc 94  Q
    |||| |||||| ||||||| ||||||||||||||||| ||||||||    
T  26498810 tttacttctaataaattcctctaattaccaagttgaacgacaatcc 26498765  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 16440501 - 16440618
Alignment:
Q  23 aaccacttcatctctttttaattctatttatttctaacaaattccgctaattaccaagttgaatgacaatcctgatagagacgataacttactaccttat 122  Q
    ||||| || |||||||||  ||| |||||| || ||| |||||||||||||| |  |||||||  || |||||  ||||| |||||||||||||| || |    
T  16440501 aaccagtttatctctttt--attttatttacttataataaattccgctaattgcttagttgaacaacgatccttgtagaggcgataacttactacttttt 16440598  T
Q  123 tacttgtgtacgatttggtg 142  Q
    ||| | |||| |||||||||    
T  16440599 tacctatgtatgatttggtg 16440618  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 23072552 - 23072516
Alignment:
Q  239 acatctaccagtagttgaaccttatgcttttcttcat 275  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  23072552 acatgtaccagtagttgatccttatgcttttcttcat 23072516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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