View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4037_low_8 (Length: 271)

Name: NF4037_low_8
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4037_low_8
NF4037_low_8
[»] chr1 (12 HSPs)
chr1 (11-255)||(25183786-25184030)
chr1 (13-255)||(25228729-25228971)
chr1 (151-205)||(25728565-25728619)
chr1 (133-231)||(26545454-26545552)
chr1 (133-225)||(26550895-26550987)
chr1 (151-204)||(25725189-25725242)
chr1 (151-204)||(25733597-25733650)
chr1 (151-207)||(9591370-9591426)
chr1 (133-199)||(25163693-25163759)
chr1 (134-196)||(25794142-25794204)
chr1 (139-200)||(25159686-25159747)
chr1 (135-203)||(25790438-25790506)
[»] chr2 (1 HSPs)
chr2 (151-216)||(38407063-38407128)
[»] chr6 (3 HSPs)
chr6 (151-203)||(30459728-30459780)
chr6 (151-183)||(6613190-6613222)
chr6 (151-187)||(32258449-32258485)
[»] chr4 (1 HSPs)
chr4 (154-188)||(17373909-17373943)
[»] chr8 (1 HSPs)
chr8 (154-187)||(596312-596345)
[»] chr7 (2 HSPs)
chr7 (151-187)||(5922391-5922427)
chr7 (151-187)||(5931522-5931558)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 25183786 - 25184030
Alignment:
Q  11 caaaggtgggatgtctctattgactaaaaaactgctcttgttatgtgtgttgagattgctattgttacacaatgttattggatttggaacgcaccatgtg 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  25183786 caaaggtgggatgtctctattgactaaaaaactgctcttcttatgtgtgttgacattgctattgttacacaatgttattggatttggaacccaccatgtg 25183885  T
Q  111 attcttactaacgatttggacaataatctggatttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatactt 210  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25183886 attcttactaacgatttggacaataatctggacttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatactt 25183985  T
Q  211 atggttttaaatttcgagatagaattattggaaacacacaattct 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25183986 atggttttaaatttcgagatagaattattggaaacacacaattct 25184030  T

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Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 25228729 - 25228971
Alignment:
Q  13 aaggtgggatgtctctattgactaaaaaactgctcttgttatgtgtgttgagattgctattgttacacaatgttattggatttggaacgcaccatgtgat 112  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||||||||  |||||||||| | ||||||||||||||||||||||||||||||||||     
T  25228729 aaggtgtgatgtctctattgactcaaaaactgctcttcttatgtgtgttggcattgctattgatgcacaatgttattggatttggaacgcaccatgtgaa 25228828  T
Q  113 tcttactaacgatttggacaataatctggatttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatacttat 212  Q
    ||||| |||| ||||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  25228829 tcttattaacaatttggataataatctggatttaactgttcattgcaaatctgcagatgatgatcttggagttcatcttcttcatcatggtgatacttat 25228928  T
Q  213 ggttttaaatttcgagatagaattattggaaacacacaattct 255  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||    
T  25228929 ggttttacatttcgagataaaattattggcaacacacaattct 25228971  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 25728619 - 25728565
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtga 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25728619 ttcattgcaaatctaaagatgatgatcttggagttcaccttcttcatcatggtga 25728565  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 26545454 - 26545552
Alignment:
Q  133 ataatctggatttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatacttatggttttaaatttcgagata 231  Q
    ||||| |||| |||||  |||||||||| |||  ||||||||||||||||  ||||||||||||||||||||||| |||||| |||||||||| |||||    
T  26545454 ataatttggacttaaccgttcattgcaagtctggagatgatgatcttggatctcatcttcttcatcatggtgatagttatggctttaaatttctagata 26545552  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 26550895 - 26550987
Alignment:
Q  133 ataatctggatttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatacttatggttttaaatttc 225  Q
    ||||| |||| |||||  |||||||||| |||  ||||||||||||||||  ||||||||||||||||||||||| |||||| ||||||||||    
T  26550895 ataatttggacttaaccgttcattgcaagtctgcagatgatgatcttggatctcatcttcttcatcatggtgatagttatggctttaaatttc 26550987  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 25725242 - 25725189
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtg 204  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  25725242 ttcattgcaaatctgcagatgatgatcttggagttcatcttcttcatcatggtg 25725189  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 25733650 - 25733597
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtg 204  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  25733650 ttcattgcaaatctgcagatgatgatcttggagttcatcttcttcatcatggtg 25733597  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 9591370 - 9591426
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgata 207  Q
    |||||||  |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  9591370 ttcattgtcaatctaaagatgatgatcttggatctcatattcttcatcatggtgata 9591426  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 25163759 - 25163693
Alignment:
Q  133 ataatctggatttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatca 199  Q
    ||||| |||| |||||| ||||||||||||||  |||||||||  ||||| | ||||||||||||||    
T  25163759 ataatttggacttaactgttcattgcaaatctgcagatgatgacattggaatacatcttcttcatca 25163693  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 25794142 - 25794204
Alignment:
Q  134 taatctggatttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttca 196  Q
    |||| ||||||||||  ||||||||||||||  |||| |||||||||||| ||| ||||||||    
T  25794142 taatttggatttaacccttcattgcaaatctgcagataatgatcttggagctcaacttcttca 25794204  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 25159747 - 25159686
Alignment:
Q  139 tggatttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcat 200  Q
    |||| |||||| ||||||||||||||  |||||||||  ||||| | |||||||||||||||    
T  25159747 tggacttaactgttcattgcaaatctgcagatgatgacattggaatacatcttcttcatcat 25159686  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 25790438 - 25790506
Alignment:
Q  135 aatctggatttaactattcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggt 203  Q
    ||||| || |||||| ||||||||||||||  |||||||||||||||    ||| ||||||||||||||    
T  25790438 aatctagacttaactcttcattgcaaatctgcagatgatgatcttgggccacatgttcttcatcatggt 25790506  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 38407063 - 38407128
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggtgatacttatggtt 216  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||    
T  38407063 ttcattgtaaatctaaagatgatgatcttggagttcattttcttcataatggtgatatttatggtt 38407128  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 30459780 - 30459728
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttcatcttcttcatcatggt 203  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||    
T  30459780 ttcattgcaaatccaaagaggatgatcttggagttcaacttctgcatcatggt 30459728  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 6613190 - 6613222
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggag 183  Q
    |||||||||||||||||||||| ||||||||||    
T  6613190 ttcattgcaaatctaaagatgacgatcttggag 6613222  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 32258485 - 32258449
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttca 187  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  32258485 ttcattgcaaatctaaagatgaagatcttggatttca 32258449  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 17373943 - 17373909
Alignment:
Q  154 attgcaaatctaaagatgatgatcttggagttcat 188  Q
    |||||||||||||||||||||||||||||||||||    
T  17373943 attgcaaatctaaagatgatgatcttggagttcat 17373909  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 596345 - 596312
Alignment:
Q  154 attgcaaatctaaagatgatgatcttggagttca 187  Q
    |||||||||| |||||||||||||||||||||||    
T  596345 attgcaaatccaaagatgatgatcttggagttca 596312  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 5922427 - 5922391
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttca 187  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  5922427 ttcattgcaaatcaaaagatgatgatcttggatttca 5922391  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 5931558 - 5931522
Alignment:
Q  151 ttcattgcaaatctaaagatgatgatcttggagttca 187  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  5931558 ttcattgcaaatcaaaagatgatgatcttggatttca 5931522  T

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